TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGAAATACCGAATGGCTGAGAAGCATCTAAAAAGAATTC
AACATCCTAATCATCAGGGATTATGCCCATCATAACAACCCTGTGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATTAAAAACTCAGGTGAGTGCAGC
TGTTGGTGAGGATGTGGAGAAAAAGGAACACTCCTCCATTGCTGGTGGGG
CTCCCTTGACTTATTAATGTGGATTCTGGGAATCTAAATTCAGGTAATCT
TCTATTTGGGAACAGTACTTAACTGACATAAAGATCTCCCCAGTCCTCAA
TGTTCATAATTTGGTTACTAAGCCAGTGATTTTTCCTGGACAATTAAATA
GCCCATTTTTTTATATTTAATTGAGATTATTCGTCTCCATTTTGGGGGGT
CAACCTCTTACACTATAGTATCTTCCTAAAGCATTTATCCTTTCAAATAA
CCCCCCCACCCCACACACACACACATTCCTTCCTATGATTAAACTACCAC
ATTTTAGCAATTGTTCTGATGTTCCCATATAAAGACAGGGATTGCCACAG
GAATGAAAAGGCTGGCTGCTAGGCTCATTTAAAAGGGTCCTCTGAGCAGG
TGTGAAATTTAAAGGTGAATAAGGCAGGCTCCTTTCTGTTGGTGGCACTA
TTATTTCAGAGCN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAATGATATTTTCTAGTTCCATCCA
TTTGCCTAAAAACTTCATGATTTCACCAATATTAACAGCTAAGTAGTACT
CCGTTGTGCATCACATTTTCTGTATTCATTCCTCTGCACATGGTCCCCTA
TGGAGGCACTAGAGAAATGACGGAAGAAGTTTTCGCAAGGAGTTTGGAGG
AACAAAAATATGAGTCAACCAGTAACCCCAGAGCTCTTAGGGACTAAACT
ACCAACCAAAGAATACACAAGGAGGGACTCAAGGCTTTAGCACATACATA
GCCGAGAATGGTCTTGTGTGAATCAATGAGAGGAGAGGCCTTTGGCCTTG
TAAAGGCTTGATGTCACAATATAGGGGAATACCAATACAGAGAAGCAGAA
GTGGTTGGGTCAGTAAGCAGGGAGACAGGGGATGGGATAGGAGGGTTTTG
GAGGNNNTNNNNNCCCCNTNCCTCCTCCCCCTCCCTTCTCTCCTCTCTTT
CTTTTTCTTCTCCCCTCTTTTTCCTCCTCCTTTTTCTTTTTTTTTTCTTT
TCCTTTTTTTTTTTTTTCCCTCCCCCCCTTTTTCTTTTTCTCTCTTTCTT
CCCCCCTTTTTTTTTGCCCCTTCTTCTCTTCTTCTTTTCCCTCCTNTTCT
CCTTTCCTTCCGTCTTTTTCTTTCTCCCGTTTTTCTCCTCCG

Query= MSMg01no180_a22.b1 MSMg01no180_a22.b1 CHROMAT_FILE:
MSMg01no180_a22.b1 PHD_FILE: MSMg01no180_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:13 2005
         (529 letters)



>mm_chr1_105873558_105874485
          Length = 928

 Score =  957 bits (495), Expect = 0.0
 Identities = 507/511 (99%), Gaps = 1/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  ttccacctcacaccagtcagaatggctaagattaaaaactcaggtgagtgcagctgttgg 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 ttccacctcacaccagtcagaatggctaagattaaaaactcaggtgagtgcagctgttgg 869

                                                                       
Query: 79  tgaggatgtggagaaaaaggaacactcctccattgctggtggggctcccttgacttatta 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tgaggatgtggagaaaaaggaacactcctccattgctggtggggctcccttgacttatta 809

                                                                       
Query: 139 atgtggattctgggaatctaaattcaggtaatcttctatttgggaacagtacttaactga 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atgtggattctgggaatctaaattcaggtaatcttctatttgggaacagtacttaactga 749

                                                                       
Query: 199 cataaagatctccccagtcctcaatgttcataatttggttactaagccagtgatttttcc 258
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 748 cataaagatctccccagtcctcaatgttcataatttggttacaaagccagtaatttttcc 689

                                                                       
Query: 259 tggacaattaaatagcccatttttttatatttaattgagattattcgtctccattttggg 318
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 688 tggacaattaaatagcccatttttttatatttaactgagattattcgtctccattttggg 629

                                                                       
Query: 319 gggtcaacctcttacactatagtatcttcctaaagcatttatcctttcaaataacccccc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gggtcaacctcttacactatagtatcttcctaaagcatttatcctttcaaataacccccc 569

                                                                       
Query: 379 caccccacacacacacacattccttcctatgattaaactaccacattttagcaattgttc 438
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 c-ccccacacacacacacattccttcctatgattaaactaccacattttagcaattgttc 510

                                                                       
Query: 439 tgatgttcccatataaagacagggattgccacaggaatgaaaaggctggctgctaggctc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgatgttcccatataaagacagggattgccacaggaatgaaaaggctggctgctaggctc 450

                                          
Query: 499 atttaaaagggtcctctgagcaggtgtgaaa 529
           |||||||||||||||||||||||||||||||
Sbjct: 449 atttaaaagggtcctctgagcaggtgtgaaa 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space:   476442
Effective search space used:   476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)