XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATC
ATACACATGTTGATGTGCATTTGATCAATACCAGAACACTAGTGTGATAC
GTTTTCAGGCATTTTTTGACATGCTATAAATTTAGTGTTAATAACAGACA
GAAAATTTTAGGTAACCTCAGAGACCAAGGGATGGGATAAATAAATATAC
ATATTGTGATGGGGACTCTGATAGCTATCACTTTCATTCTCTTTTTCCTT
TTCATTTTCCTTTCTTCCTTGTTTCTCAGTTATTTCTTTGTTGTCTTCTC
ACACCCCACTCTTCTCTCTTTTTCTTCTTCTATTTGTCTTGTGACTTTAT
GTCAAATAATATTATTTGCAAATTTTCTTATAAAAAAGTTTGGGGAATTG
ACCCACCCCTTCTCTCATATTTAGAACACTGTTTATCACATTATTGGTAT
ATTATTTTTAAACCATTACCGACACATTGGCAATATTGATTAACTTCCCA
ACAGTAATTTCTAATACAGCCACGGAACTCTGCATGTTTTTATTAGACAC
TCCCCCCCATTTACTTTTTCTTTATATCCTCTTTAACCCATATATACTTT
TTTTGTCCTGCTCCCACCCCTCCTCACTTTTTGCTTTTTGGCCCTGCTCT
TTTTCCTTCCCTTTGTAACCACCGCCCCCCCTAACCCTTTTTATTCCCCC
CCCCCCCACTTTTTTCTCCCCACCCCTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGAATGTAGACTCCATAAAATCAAATAACCCCA
TTAAAAAATGGGCCTCAGAACTGAACAAAGAATTCTCACTCAAGGAATAC
CGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCTTCAG
GGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTGAAAA
TGGCTAAGATGAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA
GAAAAAGGAATGCTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACC
ACTCTGGAAATCAGTATGGCGGTTCCTCAGATAATTGGACATAGTACAAC
TGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCA
ACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT
AATAGCCAGAAGCTGGAAAGAATCCAGATGCCCCTCAACAGAGGAATGGA
TACAGAAAATGTGGTACATTTAAACAATGGAGTACTACTGAGCTATTAAA
AAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCAT
CATCCTGCGTGAGGTAACCCAATCACAAAGGAACTCTTACAATATGTACA
CACTTATAAGTGGATATTAGCCCAGAA

Query= MSMg01no180_b15.b1 MSMg01no180_b15.b1 CHROMAT_FILE:
MSMg01no180_b15.b1 PHD_FILE: MSMg01no180_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:16 2005
         (435 letters)



>mm_chr1_103770093_103770927
          Length = 835

 Score =  706 bits (365), Expect = 0.0
 Identities = 386/393 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcatacacatgttgatgtgcatttgatcaataccagaacactagtgtgatacg 64
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaattcatcagacaaatgttgatgtgcatttgatcaataccagaacactagtgtgatacg 334

                                                                       
Query: 65  ttttcaggcattttttgacatgctataaatttagtgttaataacagacagaaaattttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttttcaggcattttttgacatgctataaatttagtgttaataacagacagaaaattttag 274

                                                                       
Query: 125 gtaacctcagagaccaagggatgggataaataaatatacatattgtgatggggactctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtaacctcagagaccaagggatgggataaataaatatacatattgtgatggggactctga 214

                                                                       
Query: 185 tagctatcactttcattctctttttccttttcattttcctttcttccttgtttctcagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tagctatcactttcattctctttttccttttcattttcctttcttccttgtttctcagtt 154

                                                                       
Query: 245 atttctttgttgtcttctcacaccccactcttctctctttttcttcttctatttgtcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atttctttgttgtcttctcacaccccactcttctctctttttcttcttctatttgtcttg 94

                                                                       
Query: 305 tgactttatgtcaaataatattatttgcaaattttcttataaaaaagtttggggaattga 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 93  tgactttatgtcaaataatattatttgcaaattttcttatagaaaagtttggggaattga 34

                                            
Query: 365 cccaccccttctctcatatttagaacactgttt 397
              | ||||||||||||||||||||||||||||
Sbjct: 33  tttaacccttctctcatatttagaacactgttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)