BAC Information

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BAC

Clone NameMSMg01-180D10
Chromosome1 (Build37)
Map Location 75,463,406 - 75,463,995
singlet/doubletsinglet
Overlap geneAccn4
Upstream geneVil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa
Downstream geneD1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180D10.T7 (MSMg01no180_d10.b1)MSMg01-180D10.TJ (MSMg01no180_d10.g1)
ACCAG373759AG373760
length724743
length of high quality
(start - end)		679 (36 - 714)201 (67 - 267)
definitionCHROMAT_FILE: MSMg01no180_d10.b1 PHD_FILE: MSMg01no180_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:24 2005CHROMAT_FILE: MSMg01no180_d10.g1 PHD_FILE: MSMg01no180_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCGAAT
CCCCTAAGGGGAATACCAGGGACACTTTGAGGGTAAGGTTTTGTCCTCCC
TCCTCTGGCGAGTTGGTTACCTGCAGCTTCACCAACCTTTCTTCTACACA
CACACACACCCCAACACCCTCCTCCCTAGTACAGCCTTTACTCAAACTGA
TTTCTGAAACAACAACAAAATACGCATAGCAGGCACCTTGACATTTACAA
AACATGAAAACATCCACTGCTACGCTGTGTCATCCACCCGGTGCCTCTGA
CTTCAGGTGTGTTTGATGACCTTGGTTCCAGAGAAGGAAACTGAGCTCAG
AGAGGTGAGGTGACTCTAATGAAGCCACACAGCTTCAGAGAGGAAGGCTA
ACCTCCCCGATACTCCCATCATTCATTGCTTCCATCCTTCCAACCCAAAC
CTACCCAGCTTCTGTCTCAGGATGGGAAAAGACAGACTGTGCCTCACACT
GGAACTTCTTTCCTTGGTTCCTCTTTCCCTTCAGCTCCATTCTTCAGCCC
CATCCTCCCAAGGTCATTTGCCTTTCCCTTCCTCGCCGGTCCTTCACAGC
TTCTGGGTTCTAGTCTCATCCCAACCCCATCTCCGCCTGTACCCTCCATC
ACTGCATGTCCCTGAGAGCAGGAGTGGGCATCACAGACATCTTAGAGCGT
GTTAGGCCGGGTGCTCAGTCTAAN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCTGTAGACCAGGCTGGCCTTGAACTCACAGA
GATCTGTCTGCCCCTGCCTCCCAAGTGCTGGGATTCCAGGATGTGTTACC
TCATCCAGCCTAAACTCAGCTTTTTTATTTTTTTAAAGATTTATTTATTT
TATGTATATGAGTACATTGTTGTTATCTTCAGGCACACCATATTAGGGCA
CCAGATCCCATTACATATGGTTGCGATCCACCATGTGGTTGCTGCGAATC
GAATTTTTTTTTTCTGGAAGAGTATTTCGTGCTCTTAACCGCTTTTTCTA
TTCTCTCCCCCCCCCCCCCTATTTGTTTTTTGAGATTATGTTTGTTTTTT
CCCCCCCAAAAAAAAAAAAACTATTGGGGGGTTGTTTCTCCATCGCTTCA
ATCTCAACCCCTTTTACCTTTTTTTAACTCCCTAACTTTTTTTATTCCTC
CCCCATTAAATAAATCCCCCTCTTCATTTATTCCTGACATGCTATCTTAT
TACTATGCTCTCCCTTTTTTTTCATCCAATCTAATATTATCGCCCCACGA
TTTTTTTCTTATTTCACCCCTCCCCCATTAAATATATAACTTCCCCCTCT
TCCCTTTTCTCTTATTATCTTCCGCTATAACTCCTGCGACTTCCATCCCC
ATTTTTATTTTATTACCATTTTTAATCGATCTCTATCATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_d10.b1 MSMg01no180_d10.b1 CHROMAT_FILE:
MSMg01no180_d10.b1 PHD_FILE: MSMg01no180_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:24 2005
         (679 letters)



>mm_chr1_75463406_75464485
          Length = 1080

 Score =  971 bits (502), Expect = 0.0
 Identities = 572/602 (95%), Gaps = 13/602 (2%)
 Strand = Plus / Minus

                                                                       
Query: 18  cctaaggggaataccagggacactttgagggtaaggttttgtcctccctcctctggcgag 77
           ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 590 cctaaggggaacaccagggacactttgagggtaaggttctgtcctccctcctctggtgag 531

                                                                       
Query: 78  ttggttacctgcagcttcaccaacctttcttctacacacacacacaccccaacaccctcc 137
           |||||||| |||||||||||||||||||||||||||||||||||           |||||
Sbjct: 530 ttggttacttgcagcttcaccaacctttcttctacacacacaca-----------cctcc 482

                                                                       
Query: 138 tccctagtacagcctttactcaaactgatttctgaaacaacaacaaaatacgcatagcag 197
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccccagtacagcctttacccaaactgatttctgaaacaacaacaaaatacgcatagcag 422

                                                                       
Query: 198 gcaccttgacatttacaaaacatgaaaacatccactgctacgctgtgtcatccacccggt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcaccttgacatttacaaaacatgaaaacatccactgctacgctgtgtcatccacccggt 362

                                                                       
Query: 258 gcctctgacttcaggtgtgtttgatgaccttggttccagagaaggaaactgagctcagag 317
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 361 gcctctgacttcaggtgtgtttgacgaccttggttccagagaaggaaactgagctcagag 302

                                                                       
Query: 318 aggtgaggtgactctaatgaagccacacagcttcagagaggaaggctaacctccccgata 377
           |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||
Sbjct: 301 aggtgaggtgactctaatgaagccgcacagcttcagagtggaaggctaagctccccgata 242

                                                                       
Query: 378 ctcccatcattcattgctt-ccatccttccaacccaaacctacccagcttctgtctcagg 436
           |||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 ctcccatcattcattg-ttagcatccttccaacccaaacctacccagcttctgcctcagg 183

                                                                       
Query: 437 atgggaaaagacagactgtgcctcacactggaacttctttccttggttcctctttccctt 496
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atggaaaaagacggactgtgcctcacactggaacttctttccttggttcctctttccctt 123

                                                                       
Query: 497 cagctccattcttcagccccatcctcccaaggtcatttgcctttcccttcctcgccggtc 556
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct: 122 cagctccattcttcagccccatcctcccaaggtcatttgtctttcccttcctcaccagtc 63

                                                                       
Query: 557 cttcacagcttctgggttctagtctcatcccaaccccatctccgcctgtaccctccatca 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  cttcacagcttctgggttctagtctcatcccaaccccatctccgcctgtaccctccatca 3

             
Query: 617 ct 618
           ||
Sbjct: 2   ct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space:   715830
Effective search space used:   715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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