BAC Information

Click to search

BAC

Clone NameMSMg01-180E17
Chromosome1 (Build37)
Map Location 116,581,024 - 116,581,310
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180E17.T7 (MSMg01no180_e17.b1)MSMg01-180E17.TJ (MSMg01no180_e17.g1)
ACCAG373815AG373816
length695699
length of high quality
(start - end)
518 (50 - 567)288 (80 - 367)
definitionCHROMAT_FILE: MSMg01no180_e17.b1 PHD_FILE: MSMg01no180_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:30 2005CHROMAT_FILE: MSMg01no180_e17.g1 PHD_FILE: MSMg01no180_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATC
TTGTCAAATGCTTTTTCTGCTTCTACCGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAA
ACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATT
GCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTT
TGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTG
GATCTTTCTGTGGTTTTGGTATCACAGTAATAGTGGCTTCATAAAATGAG
TTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAAACT
GGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATC
TGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTT
CTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAAC
TTTGGTACCTGTTATCTGTCCAGAAATTTGTCCATTTCGCCCAGCTTTTC
CAGTTTTTTTGACTATAGCCTTTTTGCAAAAGCATTTGATGTTGG
CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACAGTAGAGGTAGAAGCC
AACAGGAAGCAGTATCAAGTCTTCTTGCAGATATCTGAACTCAGAGAAAC
AGACACACAATATTCTTCTTTTGAGGACTGGGTAGTGGTTATCATAAACT
TAGCAAACCCTAATTCTGCTTTTATTGCAGCACGGCTGCCACACTCAATG
TATGAATTCATGAGCCAGATATTTTCCAAGAGTATTTTGTGTATAAAGAC
TAAATTTATAATTATAATTTGATTTTCAATTGTCAGGAAAGTTGCTCTCT
CTTTCCCTCAATTATTATTCTAATGGACCACCATTCACTTCCTGCTCTTG
CAAGAGACTGGAGTTCAGTTTTTAGCAGCCATCCTGGGCACTCCACAAAA
AACTATGCACATGTGCGTGTACGCTCATGCACACACATACACATAAATTC
ATTAAACACTAAAACTACATTTTCTCTGAATATGCTTTCTTTTTAAGAAA
ATGTTTACATCATATTTAGAGATGTACTGGGAAGTCCAGCAGATGACGGA
GAACTGTGGATTGTTTTTCCATATGACAGTCATTTTTTTTAATTTATTAT
GATTTTTATCAGATATTTTCTTTATTTACATTTCAAATGCTATCCTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_e17.g1 MSMg01no180_e17.g1 CHROMAT_FILE:
MSMg01no180_e17.g1 PHD_FILE: MSMg01no180_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:30 2005
         (288 letters)



>mm_chr1_116580824_116581510
          Length = 687

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%), Gaps = 1/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacagtagaggtagaagccaacaggaagcagtatcaagtcttcttgcagatatctgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aaaacagtagaggtagaagccaacaggaagcagtatcaagtcttcttgtagatatctgaa 260

                                                                       
Query: 61  ctcagagaaacagacacacaatattcttcttttgaggactgggtagtggttatcataaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagagaaacagacacacaatattcttcttttgaggactgggtagtggttatcataaac 320

                                                                       
Query: 121 ttagcaaaccctaattctgcttttattgcagcacggctgccacactcaatgtatgaattc 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 321 ttagcaaaccctaattctgcttttgttgcagcacggctgccacactcaatgtaagaattc 380

                                                                       
Query: 181 atgagccagatattttccaagagtattttgtgtataaagactaaatttataattataatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 atgagccagatattttccaagagtattttgtgtataaagactaaatttataattata-tt 439

                                                           
Query: 241 tgattttcaattgtcaggaaagttgctctctctttccctcaattatta 288
           |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 tgattttcaattgtcaggaaagttgctctctctttccctcaaatatta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space:   189162
Effective search space used:   189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)