BAC Information

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BAC

Clone NameMSMg01-180N22
Chromosome1 (Build37)
Map Location 37,242,778 - 37,242,909
singlet/doubletsinglet
Overlap gene4921511C04Rik
Upstream geneUgcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik
Downstream geneCnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180N22.T7 (MSMg01no180_n22.b1)MSMg01-180N22.TJ (MSMg01no180_n22.g1)
ACCAG374222AG374223
length744748
length of high quality
(start - end)
132 (389 - 520)38 (511 - 548)
definitionCHROMAT_FILE: MSMg01no180_n22.b1 PHD_FILE: MSMg01no180_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:13 2005CHROMAT_FILE: MSMg01no180_n22.g1 PHD_FILE: MSMg01no180_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTCTG
AGCTTTGTGGAAGTCTTTGAAATAATCACATCCGATAAGACCTTAGTACC
CTTGCATAGCCCATTGAGTGATGGGATTTTTCTAGTTGATAATAACTACA
AGGCTTCTCCCAGCTCGACTTTTTTTCTCTGACGCCTTCTAAAAGGATTG
GAAGCAGTGATGCTCCAAAGCTAATTAGGGCAAAAACAAAACAAAACTGG
TTCTGAACGGACGCAAGGATGGGCAGGTGCCATTTAAGCCCAGGTATTTG
GAGCTCTGAACACAGCCTGACACAGCCTTAACACGGGTCCCTAGGAAAAA
AAAATTGCCAAACCAGAGAGCCATGGTGAGTGGACTAGAATGTAGTCATA
GCATTGCCAAGATGCCCTCTCTGAAGAAAAGCCAACACTCCTTGGTAAAT
AAGCTTTGTCCAGTGCATTCCCTAAATAAGTCTTATTTATGACATCATAG
GCAGGGTTTGGTTTTTGTTTTGTTTTGCTGAAGTTACTCTAAAGGAGAGG
GTTGCGTGTATATATGCTTAACATGCTGTCTAAACCACCATAAACATAAT
ACGTGGTAAATATAATATATTTTAACGCTGTCATCATCTGAATTCTTGTT
TTTATTCCTCTACTCTATCTTTTTTTCTTCTCTTCTCTAAATTATTCCGT
CTACCCCACCCACCATTACTATATCTTTTTTTTCTCATATTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACTTCCTACACTGTTTTCAAGGCGCCCCACCCTGC
AGACTGTATTCTCCGCTTCCTCTCGGGTTTCAAGGATGACGAGGTCTTGT
GATCCTCACAGCCTTTCTGCTGCCTGCTCTGATCGAGGAATTAAGACTGT
CCCAGGGCATCCTGCCACCCAGCTTCAACCTTCTTCCTCAGGCTGCAATG
TGACTAATGTTTGAGGGTGCATGTCTCTCACAGAGCCACAAAAGCCCTAC
CACATCAAGCCCAGGTTGTAGCCTCAAACCTCAAGAGAAAAAGTTGTTCC
CTTCTTGATAGCCACCATCTCACCTGGGATCTCTGCACCCTTTGTCTGGC
GGCTCAAGGCCGGGCTTCCTCCGTGAAGACCTTGAACTCAAAGGTGATAC
TCCAAGGGCAGGAGGCTGACAGTGGGTACACAGAGTAAGGCGTGGCTGGG
AGCAAGGGACGCCTTAATATTCTTCATGTCCCCACAACCAGCACTACCCA
GGGCAGACCCCAAAGGGCTAATTTCTAAAGTGTGTCAAGCTTCTACTTGC
CCACATGGCTCCAGTCTCCCCTAAGCCTCATACAGGGGGCTCAAAAGTAC
TCTCATAGGTGCCTACAAGCTCTCTGCAGATGGTTATCTGTTCTGCTCTC
TGGTGTATGTCAAGGAATGCCAGAGTGGTTTCCCATGTGTCCCCCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_n22.b1 MSMg01no180_n22.b1 CHROMAT_FILE:
MSMg01no180_n22.b1 PHD_FILE: MSMg01no180_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:13 2005
         (132 letters)



>mm_chr1_37242578_37243109
          Length = 532

 Score =  255 bits (132), Expect = 6e-73
 Identities = 132/132 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtagtcatagcattgccaagatgccctctctgaagaaaagccaacactccttggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtagtcatagcattgccaagatgccctctctgaagaaaagccaacactccttggtaa 260

                                                                       
Query: 61  ataagctttgtccagtgcattccctaaataagtcttatttatgacatcataggcagggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagctttgtccagtgcattccctaaataagtcttatttatgacatcataggcagggtt 320

                       
Query: 121 tggtttttgttt 132
           ||||||||||||
Sbjct: 321 tggtttttgttt 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)