BAC Information

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BAC

Clone NameMSMg01-180O19
Chromosome1 (Build37)
Map Location 32,134,257 - 32,134,578
singlet/doubletsinglet
Overlap genenone
Upstream gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056, LOC100041238
Downstream geneKhdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180O19.T7 (MSMg01no180_o19.b1)MSMg01-180O19.TJ (MSMg01no180_o19.g1)
ACCAG374262AG374263
length708702
length of high quality
(start - end)
330 (46 - 375)237 (126 - 362)
definitionCHROMAT_FILE: MSMg01no180_o19.b1 PHD_FILE: MSMg01no180_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:17 2005CHROMAT_FILE: MSMg01no180_o19.g1 PHD_FILE: MSMg01no180_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCCTTTCTTGCTATGGAGATGACTGGAATGTTAGAAAAGGTGC
TATGCTTTTTAGTTTTGTCTTCTTCCCATAAACTAGATTCATTTGGTAAG
AGGAGACCTCAACTGAGGAGTTGTTTCCATCTTTACATCTTTGGCATGTA
ATCATATCAATGAGAGAATTTTCTTGATTAATAGTTTATGTGGGGTACTA
TATCACCTTACTGTTTTCTACCCGAAATCCCCATTGTTGATAATGGACCA
TTCCTTCATCAGGATACAATAATCCATTTCCAGCCTCATTTCTCTCAGCT
CTCATTAGCTCAGGTAGTTTTGCGCACAGCAATTTAGTATGGTGCAACCT
CTTCGGTGCCATTTCTTATAAAATTATAAGATGTTATGTACCATTTGTGT
CTAGTGATGGCAGAGTTCTCAAGGTTGCCACCAGAAAACTAATGTTTGGC
CACTTGGCAATAAGAAAGCCGGCCATATTCTTCAAAGCCATTGGTGCAGC
AATGACAAGTTGCCAATCTAANAAGTTAAGAAAATATTCAAAAGCTGAAA
GTGGTACCTTCTTCCTTACTTTGATTTCAACCTTTTAAAACATTTTCCTT
GGTCAACTCATTGCATGGTTCTTTTTAAAGACTTACTTTGGATGAAATAA
ACTTTTAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTAAGGTAATTGAA
AGTTTTGCTGGGTATTATAGCCCATGCTGGCATTTGTGTTCTTTTAGTGT
CTGAATAACATCTGTCAAGGATCTTCTGGCTTTCATAGTCTCTGGTGAAA
AGTCTGGAGTAATTCTGATAGCCCTACTTTTATATTTTATTTGACCTTTT
TCACTTACTGCTTTTAATATTCTATCTTTATTTAGTGCATTTGTTGTTCT
GATTATTATGTGTCGTGAGGAATTTCTTTTCTGATCCAGTCTATTTGGAG
TTCTGTATGCTTTTTTTTTGCCCCCCGCCACCTCCTTTTCTTTAGTTTTG
GGAAGTTTTCTTCTATAACTTTGTTGAAGATATTTGCTGGCCCTTTAAAT
TGAAAATCTTCATTCTCATCTACTCCTATTATCCATAGGTTTGGTCTTCT
CATTGTGTCCTGGATTTCCTGAATGTTTTGAGTTAGGATCTTTTTGCATT
TTCCATTTTCTTTGATTGTTGTGCTGATGTTCTCTATGGAATCTTCTGCA
CCTGAGATTCTCTCTTTCATCTCTTGNATTCTGTTGCTGACGCTTGCATC
TATGGTTCCAGATTTCCTTTCCAAGGTCTCCTAACTCCAGCGTTGCCTTC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_o19.b1 MSMg01no180_o19.b1 CHROMAT_FILE:
MSMg01no180_o19.b1 PHD_FILE: MSMg01no180_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:17 2005
         (330 letters)



>mm_chr1_32133858_32134587
          Length = 730

 Score =  551 bits (285), Expect = e-161
 Identities = 314/325 (96%), Gaps = 3/325 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccctttcttgctatggagatgactggaatgttagaaaaggtgctatgctttt 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaattcttccctttcatgatatggagatgactggaatgttagaaaaggtgctatgctttt 662

                                                                       
Query: 65  tagttttgtcttcttcccataaactagattcatttggtaagaggagacctcaactgagga 124
           ||||||||||  |||   |||||||||||||||||||||||||||||||||||||   ||
Sbjct: 661 tagttttgtcaacttggtataaactagattcatttggtaagaggagacctcaact---ga 605

                                                                       
Query: 125 gttgtttccatctttacatctttggcatgtaatcatatcaatgagagaattttcttgatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gttgtttccatctttacatctttggcatgtaatcatatcaatgagagaattttcttgatt 545

                                                                       
Query: 185 aatagtttatgtggggtactatatcaccttactgttttctacccgaaatccccattgttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aatagtttatgtggggtactatatcaccttactgttttctacccgaaatccccattgttg 485

                                                                       
Query: 245 ataatggaccattccttcatcaggatacaataatccatttccagcctcatttctctcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ataatggaccattccttcatcaggatacaataatccatttccagcctcatttctctcagc 425

                                    
Query: 305 tctcattagctcaggtagttttgcg 329
           ||||||||||||||| |||||||||
Sbjct: 424 tctcattagctcagggagttttgcg 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)