Query= MSMg01no181_g15.b1 MSMg01no181_g15.b1 CHROMAT_FILE:
MSMg01no181_g15.b1 PHD_FILE: MSMg01no181_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:52 2005
(525 letters)
>mm_chr1_37664414_37665338
Length = 925
Score = 806 bits (417), Expect = 0.0
Identities = 494/531 (93%), Gaps = 22/531 (4%)
Strand = Plus / Plus
Query: 4 ggaattctacagactgccgaaggagccaccttcgggttaagacagcaacagtcattaaag 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacagactgtcaaaggagccaccttcgggttaagacagcaacagtcattaaag 263
Query: 64 aaaaaactacagaggtcccaagcacagaacagagctgagagagcagaaacgcccaggaat 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 aaaaatctacagaggtcccaagcacagaacagagctgagagagcagaaacgcccaagaat 323
Query: 124 tgtggaggaagcattgggtttcccaagcatgaaatgcgctgctatccttatggatgtgcc 183
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 324 tatggaggaagcattgggtttcccaagcatgaaatgcactgctatccttatggatgtacc 383
Query: 184 cagctctcttaaggtgaggagaccacagatggctgt-------tagagtgatgaaccagc 236
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 cagctctcttaaggtgaggagaccacagatggctgtgggctgttagagtgatgaaccagc 443
Query: 237 ctgcctctgtcttaggcctaagagccatctcatagtatagactaactgggttcaatcctg 296
|||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||
Sbjct: 444 ctgcctctgtcttaggcctaagagccatttcatagtaaagacaaactgggttcaatcctg 503
Query: 297 tttatgattacacatctgtttctcaaggattgggctataccccagctacacccttaacta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttatgattacacatctgtttctcaaggattgggctataccccagctacacccttaacta 563
Query: 357 taaatggctctaaagcgcctgctccagaaaacagccttatttcctggaaaccgcgtcctt 416
||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 564 taaatggctctaaagtgtctgctccagaaaacagccttatttcctggaaactgcgtcctt 623
Query: 417 gtctctggaggatgtcctgaca-aacatgttatgcttgtggcctgcttctaa-cactcta 474
||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct: 624 gtctctggaggttgtcctga-agaacatgttatgcttgtggcctgcttctaaacactcta 682
Query: 475 cctattcgcccaccaattctcccttctggaaacaccttatcccagagggta 525
||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 683 cctattc------------tcccttctggaaacaccctatcccagagggta 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_g15.g1 MSMg01no181_g15.g1 CHROMAT_FILE:
MSMg01no181_g15.g1 PHD_FILE: MSMg01no181_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:52 2005
(539 letters)
>mm_chr1_37768688_37769626
Length = 939
Score = 803 bits (415), Expect = 0.0
Identities = 418/419 (99%)
Strand = Plus / Minus
Query: 121 ttggaagaaggaagatttactctctctccgtctgtttgccttgtgggactgagcaactgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 ttggaagaaggaagatttactctctctccgtctgtttgccttgtgggactgagcaactgc 880
Query: 181 tagatccttggacttccatttacagctgctgctgaccattgctggtagttggactgcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tagatccttggacttccatttacagctgctgctgaccattgctggtagttggactgcaga 820
Query: 241 ctgtaagtcatcaacaaattcccttactatatagagactacccataagttctgtgactct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ctgtaagtcatcaacaaattcccttactatatagagactacccataagttctgtgactct 760
Query: 301 cgagaaccctgactaatacacccactaaaagtctgatagcacacagccttatctcttccc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agagaaccctgactaatacacccactaaaagtctgatagcacacagccttatctcttccc 700
Query: 361 agggttggtgactcactctgtaaacggatcatttccagaggacctaaaatccacgtcgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agggttggtgactcactctgtaaacggatcatttccagaggacctaaaatccacgtcgtt 640
Query: 421 ttgaataattgttaggcacccgccagaatctctgttggaaattagctcctttgtacccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttgaataattgttaggcacccgccagaatctctgttggaaattagctcctttgtacccct 580
Query: 481 ctgtatatctttatatctttgtgtccatatgctttccacacacagttaggttgtgggtg 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctgtatatctttatatctttgtgtccatatgctttccacacacagttaggttgtgggtg 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
