Query= MSMg01no181_i01.b1 MSMg01no181_i01.b1 CHROMAT_FILE:
MSMg01no181_i01.b1 PHD_FILE: MSMg01no181_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:58 2005
(410 letters)
>mm_chr1_36933300_36934109
Length = 810
Score = 681 bits (352), Expect = 0.0
Identities = 367/372 (98%)
Strand = Plus / Minus
Query: 1 accaagaaagtcctatagatttcatttggaagtcacctgcttaattttaccccaactggt 60
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 372 accaagaaagtcctgtagatttcatttggaagtcacctgcttaattttaacccaactggt 313
Query: 61 aaccaaaccgtagagctcatttctccaggatttcattgttttctagctggagctcagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 312 aaccaaaccgtagagctcatttctccaggatttcattgttttctagctgcagatcagaaa 253
Query: 121 agtctgcgtttctgtctctccagatctggagggcggtatgttcctgtgtacaagagagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agtctgcgtttctgtctctccagatctggagggcggtatgttcctgtgtacaagagagaa 193
Query: 181 agacagagagggagagaaggaaacacagacagagatacagggagtttgtctgtctggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agacagagagggagagaaggaaacacagacagagatacagggagtttgtctgtctggatg 133
Query: 241 tttatgtgcacatgtgtacatgtgaaggccagagacagccacagatgttgtgtctcaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tttatgtgcacatgtgtacatgtgaaggccagagacagccacagatgttgtgtctcaggc 73
Query: 301 atcacccaccttttctcttcgaggcaggatcacccactgccctgtaattagccagttagt 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 72 atcacccaccttttctcttcgaggcaggatcacccactgccctgtagttagccagttagt 13
Query: 361 ctaggctgatgg 372
||||||||||||
Sbjct: 12 ctaggctgatgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_i01.g1 MSMg01no181_i01.g1 CHROMAT_FILE:
MSMg01no181_i01.g1 PHD_FILE: MSMg01no181_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:59 2005
(526 letters)
>mm_chr1_36782348_36783276
Length = 929
Score = 890 bits (460), Expect = 0.0
Identities = 512/534 (95%), Gaps = 12/534 (2%)
Strand = Plus / Plus
Query: 1 aaacaccaagaaaggactctgcttctcaaagcaggggagaatagcctcgggtgactggaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aaacaccaagaaaggactctgcttctcaaagcaggggagaatagcct-gggtgactggaa 259
Query: 61 caggccaacctgcctacatgcttacaccctggggcgtgtggaaagacctttgctttagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caggccaacctgcctacatgcttacaccctggggcgtgtggaaagacctttgctttagga 319
Query: 121 cttccgacagccctacagagctgcctcatcgttccctctgaaa----ctcttgctcaggt 176
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 320 cttccgacagccctacagagctgcctcatcgttccctctgaaagaaactcttgctcaggt 379
Query: 177 tttgagaaaggtgaagatccagatgtcacttgacaggactggagagccccagaatctgtt 236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 tttgagaaaggtgaagatccagatgtcacttgacaggattggagagccccagaatctgtt 439
Query: 237 cctttgccaaaacgtcagcagagctggcaagaattgtcttctttcttttcttttttagaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 cctttgccaaaacgtcagcagagctggcaagaattgtcttctttcttttctttttcagaa 499
Query: 297 gctcttattatt----ttttaatattttttaattaggtattttcctcatttacatttcca 352
|||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 500 gctcttattattattttttttatattttt--attaggtattttcctcatttacatttcca 557
Query: 353 atgctatcccaaaagtcccccataccctcccccaccactcccctacccacccactcccat 412
||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct: 558 atgctatcccaaaagtcccccgtaccctccccc-ctactcccctacccacccactcccac 616
Query: 413 tttttgaccctggcgttcccctgtactggagcatataaagtttgcctgtccaatgggcct 472
|||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 617 tttttggccctggcgttcccctgtactggggcatataaagtttgcaagtccaatgggcct 676
Query: 473 ctctttccagtgatggccgactaggccatcttttgatacatatgcagctagagt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctctttccagtgatggccgactaggccatcttttgatacatatgcagctagagt 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 929
Length adjustment: 10
Effective length of query: 516
Effective length of database: 919
Effective search space: 474204
Effective search space used: 474204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
