Query= MSMg01no181_o20.b1 MSMg01no181_o20.b1 CHROMAT_FILE:
MSMg01no181_o20.b1 PHD_FILE: MSMg01no181_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:31 2005
(673 letters)
>mm_chr1_95476968_95478044
Length = 1077
Score = 1270 bits (657), Expect = 0.0
Identities = 669/675 (99%), Gaps = 4/675 (0%)
Strand = Plus / Minus
Query: 3 gaattcaaagcaggtgtcaccaaaaggcaatgctgcagaggccaattcgtctgtcactac 62
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattcaaagcaggtgtcaaaaaaaggcaatgctgcagaggccaattcgtctgtcactac 818
Query: 63 agaactggctggaaatgtccttctaccttagagtggatgtgcagattttaacatcactcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 agaactggctggaaatgtccttctaccttagagtggatgtgcagattttaacatcactcc 758
Query: 123 acatgagagctttaattccttaacattcaaaatagtatataatctaccagtaattagaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 acatgagagctttaattccttaacattcaaaatagtatataatctaccagtaattagaaa 698
Query: 183 aatcctgactatctagcatgaatgtattcactttctatgtcggaagcaaaggattctgat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aatcctgactatctagcatgaatgtattcactttctatgtcggaagcaaaggattctgat 638
Query: 243 c----tctatataccagtgggggttagcatctctttataaaggaatctggggagggggtc 298
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctctatctatataccagtgggggttagcatctctttataaaggaatctggggagggggtc 578
Query: 299 aggatgggtttttatctatctgctttcctggagtggaactctttaaattgggctggaaac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aggatgggtttttatctatctgctttcctggagtggaactctttaaattgggctggaaac 518
Query: 359 tgaaagggactctctccccacttgactgtgcaaaggggttgctgaagaagaggttcatgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgaaagggactctctccccacttgactgtgcaaaggggttgctgaagaagaggttcatgt 458
Query: 419 ccaggggcgcctcagcctcagagtcccatgagtctgagtctgtactgctggagccctcgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccaggggcgcctcagcctcagagtcccatgagtctgagtctgtactgctggagccctcgg 398
Query: 479 ctgttgtgggtgggtagctgagctgctctaactggtcgataatgtcagagaactggaagg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctgttgtgggtgggtagctgagctgctctaactggtcgataatgtcagagaactggaagg 338
Query: 539 ccgagctggactcggagcggactgagcaggctgggaagttgaccatggagctggcctcag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccgagctggactcggagcggactgagcaggctgggaagttgaccatggagctggcctcag 278
Query: 599 actgattggctgagctggatgtatgcagagaaaacccaccatgcagaggcatgttattga 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 actgattggctgagctggatgtatgcagagaaaacccaccatgcagaggcatgttattga 218
Query: 659 gggagctgttttcag 673
|||||||||||||||
Sbjct: 217 gggagctgttttcag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1077
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1067
Effective search space: 707421
Effective search space used: 707421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_o20.g1 MSMg01no181_o20.g1 CHROMAT_FILE:
MSMg01no181_o20.g1 PHD_FILE: MSMg01no181_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:31 2005
(290 letters)
>mm_chr1_95332016_95332706
Length = 691
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 1 accattaggcaccttcccccggaaactatcttgccagcaccatcatacattttgagatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accattaggcaccttcccccggaaactatcttgccagcaccatcatacattttgagatta 260
Query: 61 actgctgataaaggtaggaaagctctttcttcctaagaatgtcagtcaacttaaaaaata 120
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 actgctgataaaggtagggaagctctttcttcctaagaatgtcaatcaacttaaaaaata 320
Query: 121 gacatttttaatagataaaaccaccattttaacttttaatgaattttgctagatcatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacatttttaatagataaaaccaccattttaacttttaatgaattttgctagatcatcag 380
Query: 181 tgaaccatgaacaaagaataaataaagcagaatatactcctgtctattaaccaatctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaccatgaacaaagaataaataaagcagaatatactcctgtctattaaccaatctcag 440
Query: 241 aatcggttcattaaaaaaaagaaaaaaa-tctataatgacatgaatcctt 289
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 aatcggttcattaaaaaaaagaaaaaaaatctataatgacatgaatcctt 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space: 191642
Effective search space used: 191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
