Query= MSMg01no182_b04.b1 MSMg01no182_b04.b1 CHROMAT_FILE:
MSMg01no182_b04.b1 PHD_FILE: MSMg01no182_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:43 2005
(482 letters)
>mm_chr1_34631597_34632477
Length = 881
Score = 801 bits (414), Expect = 0.0
Identities = 465/482 (96%), Gaps = 1/482 (0%)
Strand = Plus / Plus
Query: 1 agccgtgctttacctgcctgcccaccttcccagccctgtttacatagcgtaaacacagta 60
|||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agccgtactttacctgcctgctcaccttcccagccctgtttacatatcgtaaacacagta 260
Query: 61 catgtgaacgcggcactgatcgaataaaataagaggaaggctggtaagctcttccttcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgaacgcggcactgatcgaataaaataagaggaaggctggtaagctcttccttcgc 320
Query: 121 atgagggagacatttgcggatatttttgttgggatagggatgggactactcagctgctac 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 321 atgagggagacatttgcggatatctttgttgggatagggatgggactactcagccgctac 380
Query: 181 actcccggtttcttcctcttcctgcattccggcaatcttcccaggatgtgcagctcagtc 240
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 actccccgtttcttcctcttcctgcattccagcaatcttcccaggatgtgcagctcagtc 440
Query: 241 tagctgtttgatctgacagatttatttctctggtagtctgcagtgagcaggctcccatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tagctgtttgatctgacagatttatttctctggtagtctgcagtgagcaggctggcatgg 500
Query: 301 ccaaaatgcaaatctgggaaggacttgcgcacgttgttcgcgcacccttacgagacagcc 360
||| ||||| |||||||||||| || ||||| ||||||||||| |||||| ||||||||
Sbjct: 501 ccagaatgcgaatctgggaagggct-gcgcatattgttcgcgcatccttacaagacagcc 559
Query: 361 tgcctggcttccaggaaatcatacagtgaaaacaggtaggtttgctataggggcagatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcctggcttccaggaaatcatacagtgaaaacaggtaggtttgctataggggcagatcc 619
Query: 421 gagtccatgggtcacagacattgaaggtttacattcttgcctcacagaacaatgaattag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagtccatgggtcacagacattgaaggtttacattcttgcctcacagaacaatgaattag 679
Query: 481 ac 482
||
Sbjct: 680 ac 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space: 411112
Effective search space used: 411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_b04.g1 MSMg01no182_b04.g1 CHROMAT_FILE:
MSMg01no182_b04.g1 PHD_FILE: MSMg01no182_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:43 2005
(247 letters)
>mm_chr1_34808960_34809606
Length = 647
Score = 455 bits (235), Expect = e-132
Identities = 244/247 (98%)
Strand = Plus / Minus
Query: 1 gccctgggctggacttgggggtctttggatctcaggctgcctaacacacccttgccatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gccctgggctggacttgggggtctttggatctcaggctgcctaacacacccttgccatct 388
Query: 61 ctgcttacccaattctgtcttattggtacacaaattctggcatagaaagaaaagggaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgcttacccaattctgtcttattggtacacaaattctggcatagaaagaaaagggaagg 328
Query: 121 gggctctgggcgttcaagtcatggggtcatcaaaaaaagagtctgggctgggtttgcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gggctctgggcgttcaagtcatggggtcatcaaaaaaagagtctgggctgggtttgcagt 268
Query: 181 tctagaggacagaggaagtataccttcctactccaaaacacggggtatgctttggggtaa 240
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 267 tctagaggacagaggaagtataccttcctactccaaaatacaaggtatgctttggggtaa 208
Query: 241 agccaag 247
|||||||
Sbjct: 207 agccaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
