BAC Information

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BAC

Clone NameMSMg01-183A06
Chromosome1 (Build37)
Map Location 148,209,742 - 148,385,402
singlet/doubletdoublet
Overlap geneLOC383571, B830045N13Rik
Upstream genenone
Downstream geneLOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183A06.T7 (MSMg01no183_a06.b1)MSMg01-183A06.TJ (MSMg01no183_a06.g1)
ACCAG375737AG375738
length737729
length of high quality
(start - end)		667 (44 - 710)624 (76 - 699)
definitionCHROMAT_FILE: MSMg01no183_a06.b1 PHD_FILE: MSMg01no183_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:55 2005CHROMAT_FILE: MSMg01no183_a06.g1 PHD_FILE: MSMg01no183_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,209,742 - 148,210,404)(148,384,779 - 148,385,402)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTA
TCCGATTTGGGATAGGTAAAGATCCTGGATGTTCATTTCAAATGTTATAT
AAGCTGGACTATACTGTGCATTATACCATTTCCCAAGAATTTATAATTAT
TTTGTTTGAAAGTAAAATGATAAAAGGAAACTTAGTTGATTTAATTTTTT
TGTGCCCAGAGAACAGCTATAATGAGAATGTTCCAGGAAAGAGCATCTTA
ATGAGAAGTTAGAGTCATACCCTAGTGCATGTGTGTAATCTCACCACTTT
GCAAGTAGAATCAGAAAGATGAGGAGCAAAACGTTCCCTAAGAACATATA
GAAATCACAAAGCCAGCCTAAACTCTAGGAAACTCTGTCTTAAAACAAAG
AGGAGAAAACTTAGTGGAATACATCAGCATCTAATGTTTATTAGAAGAGA
GACCAAGAGCTTGATTCAGTAATACTTCATGAAATATACATCCTTATGAT
ATACTTTGATTCCTAGATAGCTTGATATTAATTTTTATGGACATATGCTG
GCGGTATTATAAGCAATTCACAAACTAATTTCAATTAACTTTATATTAAA
ATAAAGTTTAGAAGAGGCTTATTATCATTGGTAGTAN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTACTCTGAGACATCTCAGCC
TATTAACAAGAAATAGTGAATAATATTAAAAGGTTTTTAATTTCACTTCT
GTCTCAGAAACACGAACTATAAACTGAGTTACATTAAATGGATTCTGTAG
AAAAGAGGCTGAGGCAATGTATAATGTTGTACAAGAGCTAAGTTGGCAAA
ACCTTTCTTTGACCTTAAAGAAGTATACTTGTTAGAATTATTTCCAAATC
AATAACCATTAGACCCAAACAATGTTGATTTGTGCCTTCCTGAAAGGTAA
ATGGCTCAAACAAAATCATTGCAATAAAAATTTCCTCTCTAACAGTATTC
ATTTCAACAGGAAGCCAATAAATTTGACTCTCGTGAAAAGCCAATAAATA
ATGAAAAGCCTAGAATTTTATTTTTAATCAGCAAAACTTTAAATGCATTG
GCATGTACAGTGTCTAGTAATGCAAGAAAGTTTTGAAATTGTATATTGAT
ATAGACATTATAGGACTTGAAGAGAAAGAAGAACACAGGTCACTCTGAAG
ATTGTAAATGTCTCCTTGTATCCCTTAATTGGGAAATATAATATGGTGAT
GAAACTGTGTGTTAAAACCACAGCTTAATGTTCATGCTTGTTTCTACAGG
ATAAAATAAAATGTCCTTATCTTATATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_a06.b1 MSMg01no183_a06.b1 CHROMAT_FILE:
MSMg01no183_a06.b1 PHD_FILE: MSMg01no183_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:55 2005
         (667 letters)



>mm_chr1_148209538_148210604
          Length = 1067

 Score = 1205 bits (623), Expect = 0.0
 Identities = 653/663 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttcagctctgagccccattttttaatggggttatttgattttctggagtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttcagctctgagccccattttttaatggggttatttgattttctggagtc 264

                                                                       
Query: 65  caccttcttgagttctttatatatattggatattagtcccctatccgatttgggataggt 124
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 265 caccttcttgagttctttatatatattgcatattagtcccctattcgatttgggataggt 324

                                                                       
Query: 125 aaagatcctggatgttcatttcaaatgttatataagctggactatactgtgcattatacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatcctggatgttcatttcaaatgttatataagctggactatactgtgcattatacc 384

                                                                       
Query: 185 atttcccaagaatttataattattttgtttgaaagtaaaatgataaaaggaaacttagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttcccaagaatttataattattttgtttgaaagtaaaatgataaaaggaaacttagtt 444

                                                                       
Query: 245 gatttaatttttttgtgcccagagaacagctataatgagaatgttccaggaaagagcatc 304
            ||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 445 catttaatctttttgtgcccagaggacagctataatgagaatgttccaagaaagagcatc 504

                                                                       
Query: 305 ttaatgagaagttagagtcataccctagtgcatgtgtgtaatctcaccactttgcaagta 364
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaatgagaagttagagccatactctagtgcatgtgtgtaatctcaccactttgcaagta 564

                                                                       
Query: 365 gaatcagaaagatgaggagcaaaacgttccctaagaacatatagaaatcacaaagccagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaatcagaaagatgaggagcaaaacgttccctaagaacatatagaaatcacaaagccagc 624

                                                                       
Query: 425 ctaaactctaggaaactctgtcttaaaacaaagaggagaaaacttagtggaatacatcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctaaactctaggaaactctgtcttaaaacaaagaggagaaaacttagtggaatacatcag 684

                                                                       
Query: 485 catctaatgtttattagaagagagaccaagagcttgattcagtaatacttcatgaaatat 544
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 685 catctaatgtttattagaagagaaaccaagagcttgattcagtaatacttcatgaaatat 744

                                                                       
Query: 545 acatccttatgatatactttgattcctagatagcttgatattaatttttatggacatatg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acatccttatgatatactttgattcctagatagcttgatattaatttttatggacatatg 804

                                                                       
Query: 605 ctggcggtattataagcaattcacaaactaatttcaattaactttatattaaaataaagt 664
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctggtggtattataagcaattcacaaactaatttcaattaactttatattaaaataaagt 864

              
Query: 665 tta 667
           |||
Sbjct: 865 tta 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_a06.g1 MSMg01no183_a06.g1 CHROMAT_FILE:
MSMg01no183_a06.g1 PHD_FILE: MSMg01no183_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:55 2005
         (624 letters)



>mm_chr1_148384579_148385602
          Length = 1024

 Score = 1199 bits (620), Expect = 0.0
 Identities = 623/624 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttctactctgagacatctcagcctattaacaagaaatagtgaataatattaaaaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ctttctactctgagacatctcagcctattaacaagaaatagtgaataatattaaaaggtt 765

                                                                       
Query: 61  tttaatttcacttctgtctcagaaacacgaactataaactgagttacattaaatggattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tttaatttcacttctgtctcagaaacacgaactataaactgagttacattaaatggattc 705

                                                                       
Query: 121 tgtagaaaagaggctgaggcaatgtataatgttgtacaagagctaagttggcaaaacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgtagaaaagaggctgaggcaatgtataatgttgtacaagagctaagttggcaaaacctt 645

                                                                       
Query: 181 tctttgaccttaaagaagtatacttgttagaattatttccaaatcaataaccattagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tctttgaccttaaagaagtatacttgttagaattatttccaaatcaataaccattagacc 585

                                                                       
Query: 241 caaacaatgttgatttgtgccttcctgaaaggtaaatggctcaaacaaaatcattgcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 caaacaatgttgatttgtgccttcctgaaaggtaaatggctcaaacaaaatcattgcaat 525

                                                                       
Query: 301 aaaaatttcctctctaacagtattcatttcaacaggaagccaataaatttgactctcgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaaaatttcctctctaacagtattcatttcaacaggaagccaataaatttgactctcgtg 465

                                                                       
Query: 361 aaaagccaataaataatgaaaagcctagaattttatttttaatcagcaaaactttaaatg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaaagtcaataaataatgaaaagcctagaattttatttttaatcagcaaaactttaaatg 405

                                                                       
Query: 421 cattggcatgtacagtgtctagtaatgcaagaaagttttgaaattgtatattgatataga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cattggcatgtacagtgtctagtaatgcaagaaagttttgaaattgtatattgatataga 345

                                                                       
Query: 481 cattataggacttgaagagaaagaagaacacaggtcactctgaagattgtaaatgtctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cattataggacttgaagagaaagaagaacacaggtcactctgaagattgtaaatgtctcc 285

                                                                       
Query: 541 ttgtatcccttaattgggaaatataatatggtgatgaaactgtgtgttaaaaccacagct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttgtatcccttaattgggaaatataatatggtgatgaaactgtgtgttaaaaccacagct 225

                                   
Query: 601 taatgttcatgcttgtttctacag 624
           ||||||||||||||||||||||||
Sbjct: 224 taatgttcatgcttgtttctacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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