BAC Information

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BAC

Clone NameMSMg01-183F14
Chromosome1 (Build37)
Map Location 39,585,262 - 39,585,389
singlet/doubletsinglet
Overlap genenone
Upstream geneAff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8
Downstream geneD1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183F14.T7 (MSMg01no183_f14.b1)MSMg01-183F14.TJ (MSMg01no183_f14.g1)
ACCAG375970AG375971
length718833
length of high quality
(start - end)
432 (124 - 555)129 (77 - 205)
definitionCHROMAT_FILE: MSMg01no183_f14.b1 PHD_FILE: MSMg01no183_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:20 2005CHROMAT_FILE: MSMg01no183_f14.g1 PHD_FILE: MSMg01no183_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXATCAAAAAGAGGATCCGCGGA
ATTCTCATTTGCAAAATACTGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCACCGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTATTACCGGAGGAGCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCCCACCTATAATAGCCAGAAGCGGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGCGGTACATCTACACAATGG
AGAACTACTCAGATATTAAAAAGAATGAATTTATAAAATTCCTAGCCAAA
TGGATGGACCTGGAGGTTATCTGCCTGAGTGACGTAACACATTCACAAAG
GAACTCACTCTATATGCACTCATTGATAATTGGAATTTAGCCCCCACCCT
ACGAAATTTATTATATAATATCCCACTTCTTAACTACCTGATAACTCCAT
ATACACGCAATACTTGTG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCACAAAGAAGTAGGGATTTTGA
AAAAAGAACAATTAGTCAAATTAAAAAAAAAATCCAGCTTTAACAAAGTT
CGATCTGATCTGTGAATGGGGACTTGAAATCAGCCATTCAGGCACAAAGT
GGGTTGCTAATTGTCGTTCTTACCCCCGTTCTTCGTCTTCTATCCTCCTC
CCTATTTCTTTTTCTCTTCCTTATAACTTCCCTCCTTTCCATAATACTAC
CCCATCTACCTCTATCCTCTTTTTTTTTTTTACCCCCCCTCCCACCCACC
TCAATAAATTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCTTTATACAACC
ATTTACATACTTTTAAATTTATTCTTCCCCCCCCCCCAACAAAAAAAAAA
TAACACCCCGTTCCGCGCGATATTCCGCGCAATTTCCTTCACTTTTCCCC
CCACCTTTTTACCTGCTTTCTTTCTTTCCCCCCATCAATCCCACTCACAA
TTTTTTTTTTCTCTATTATCTCCATTTTTCTCTATTTTAATATTTTGTTT
TTTATTCCCTTATACCCCCCTATTCCCGATCTCTCCCTCTACCGTCTATT
TCCCTCCTTCCGTTCCCTCCCCACTTTTCTACTTTTTATTCCCTCCCGCC
TCCCTAATTTATCTCTCATACCTTTCTTTCCATCCTCTAATATCTGCAAG
ATTTGTACTCATTATAACCCCTCCTCCCCCCGCTATCCCTCCATTTATAT
TTTCCCCTATCATACATAGTCTTTCCCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_f14.g1 MSMg01no183_f14.g1 CHROMAT_FILE:
MSMg01no183_f14.g1 PHD_FILE: MSMg01no183_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:20 2005
         (129 letters)



>mm_chr1_39585062_39585589
          Length = 528

 Score =  234 bits (121), Expect = 1e-66
 Identities = 127/129 (98%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accacaaagaagtagggattttgaaaaaagaacaattagtcaaattaaaaaaaaaatcca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 201 accacaaagaagtagggattttgaaaaaagaacaattagtcaaatttaaaaaaaa-tcca 259

                                                                       
Query: 61  gctttaacaaagttcgatctgatctgtgaatggggacttgaaatcagccattcaggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctttaacaaagttcgatctgatctgtgaatggggacttgaaatcagccattcaggcaca 319

                    
Query: 121 aagtgggtt 129
           |||||||||
Sbjct: 320 aagtgggtt 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 528
Length adjustment: 8
Effective length of query: 121
Effective length of database: 520
Effective search space:    62920
Effective search space used:    62920
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)