BAC Information

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BAC

Clone NameMSMg01-183G01
Chromosome1 (Build37)
Map Location 129,371,638 - 129,371,923
singlet/doubletsinglet
Overlap geneMgat5
Upstream geneE030049G20Rik, LOC383559, LOC667090
Downstream geneTmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183G01.T7 (MSMg01no183_g01.b1)MSMg01-183G01.TJ (MSMg01no183_g01.g1)
ACCAG375989AG375990
length713762
length of high quality
(start - end)
383 (33 - 415)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no183_g01.b1 PHD_FILE: MSMg01no183_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:22 2005CHROMAT_FILE: MSMg01no183_g01.g1 PHD_FILE: MSMg01no183_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGAGGATCCGCGG
AATTCAGGATCATACCTACTTTGTTTTGAGACAAGCTGTGTATTAGTTGC
TTTCCTGATACTTTGACAAGACACCATAACCAAGACAACTTAGAGAAGGT
AGGGAAGAGTGACAGCCAGCATGGGAGTGTAACAGAAACTTAGGGTTCAG
ATCTTGATTTAGAGCAAGAAATAGAGTGAGTTCCCTAGAAAGAGCTCTAG
TCCTTAAACGCTCAAGGCCTGCCCCCAGTGATACACTTCCTCCAGCAAGA
CCACACCTTCTCAACCTCCCCAAACAGTGCCATCAACTGGAGACAGATTA
TCCTAATGCCAAAGACTATTAGGGACAAACTACCACCTGGTCTCATGTTT
CCTAGGCTGGTCTTACTCAACCAAGACTCTCTGAGCTGCCGCCCCCCAAT
CCATCCATCCATTCATCCATCCATCCATCCATCCATCCATCCATCCATCC
ATCCATCCATCCATCCATCCATCCATCCATCTAGGTTTTCTAGATAGGGT
TTCTTTCTGTATGCCTGGCTTCCTAGAACTCCTTCTGGCCACCAGACTGG
CCTTGAATTCTCTTGATCTACCTTGTCAATTCCTCCCATGTGCTCGGATT
ACACGATGCGTGCGCTTTTTTTTGGCACTTCCAAACTCCCTTATCCTTAC
CGCCCCTATTTCG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCCTAAAACAGGGAATGAGCACAACTCA
CTGCCGGGGATTTTGACTCTGGTTTGAACTCCCATCATCTGAGTCAGTCC
TCCTTTGGAGAGGTCATTTTAAATACGGCAAGCCACAGCACTGGCTGCAG
TGCAGCTGGGCAGGGCAGAAGGAGAGAGGGAGAAGAGCAAGCAGCTAGCT
TCCCCCCATGGGGAGGCCTGCACTTCAGCTAGCCTGTGAGGGAAGCTGCC
AGCAGTGACTCTTAAAGTGGACCCTGAAACCTGGGGTGATCTTAAAGGGG
GAGGGAGTTTTTTTTCCCCCCCCCCCCCCCCATTTAATTTAATATATTTC
CAAAATGTCGTTGCCCCCCCAAAAAAAAAAAAAAAAACCCCCGCGGTGTC
GCGTACTTATTCTCTTCTTTCTTTTTATCCTACCATCAATATTAAATCAA
AACTCTTTTATTTTTACTCTCATCTCTATTTTCTTCTATTTACTTATTCA
CAATTTGCTCCATCATCTTGATACATTTTTACCTCTAAATTAACTTAAAC
ATTTCATTATCATTACTATTTTGGCATTCAAATTTTTACATTTTTTAGAT
ACACATGGTTCTGGTTTCTTATGGAATTGTTTATACTATTACTCGATCGA
CATTAATACCTAATTTTCTATTCCTCCCCCCCCCCGCTATCTATTTTTTT
TCAATAAATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_g01.g1 MSMg01no183_g01.g1 CHROMAT_FILE:
MSMg01no183_g01.g1 PHD_FILE: MSMg01no183_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:22 2005
         (289 letters)



>mm_chr1_129371438_129372126
          Length = 689

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%), Gaps = 2/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctaaaacagggaatgagcacaactcactgccggggattttgactctggtttgaactc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 486 ctcctaaaacagggaatgagcacaactcactgccggggattttaactctggtttgaactc 427

                                                                       
Query: 61  ccatcatctgagtcagtcctcctttggagaggtcattttaaatacggcaagccacagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccatcatctgagtcagtcctcctttggagaggtcattttaaatacggcaagccacagcac 367

                                                                       
Query: 121 tggctgcagtgcagctgggcagggcagaaggagagagggagaagagcaagcagctagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tggctgcagtgcagctgggcagggcagaaggagagagggagaagagcaagcagctagctt 307

                                                                       
Query: 181 ccccccatggggaggcctgcacttc-agctagcctgtgagggaagctgccagcagtgact 239
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 306 ccccccatggggaggcctgcac-tctagctagcctgtgagggaagctgccagcagtgact 248

                                                          
Query: 240 cttaaagtggaccctgaaacctggggtgatcttaaagggggagggag 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cttaaagtggaccctgaaacctggggtgatcttaaagggggagggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)