Query= MSMg01no183_l12.b1 MSMg01no183_l12.b1 CHROMAT_FILE:
MSMg01no183_l12.b1 PHD_FILE: MSMg01no183_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:49 2005
(218 letters)
>mm_chr1_102364621_102365238
Length = 618
Score = 406 bits (210), Expect = e-118
Identities = 216/218 (99%)
Strand = Plus / Minus
Query: 1 aaaaaaagtataatagtacaacaactaagtttccccttggataaaaaacctgaatagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaaaaaagtataatagtacaacaactaagtttccccttggataaaaaacctgaatagtaa 259
Query: 61 aaacaatgctgtggaacaaaaacattcatgaaatccaaaaataaggaaaaacatttagat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaataatgctgtggaacaaaaacattcatgaaatccaaaaataaggaaaaacatttagat 199
Query: 121 tttttaaaaaataaataattaggtaattgtagtatatatggcccatagctcagtttcaga 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttttttaaaaataaataattaggtaattgtagtatatatggcccatagctcagtttcaga 139
Query: 181 agcactggtatccagggccaaaaagtgggagtgggtgg 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 138 agcactggtatccagggccaaaaagtgggagtgggtgg 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space: 127281
Effective search space used: 127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no183_l12.g1 MSMg01no183_l12.g1 CHROMAT_FILE:
MSMg01no183_l12.g1 PHD_FILE: MSMg01no183_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:49 2005
(278 letters)
>mm_chr1_102253203_102253881
Length = 679
Score = 404 bits (209), Expect = e-117
Identities = 250/279 (89%), Gaps = 25/279 (8%)
Strand = Plus / Plus
Query: 1 tctttgagcatttcttctagtattgttgtgacaggaaaaaaaaa-tcaatgaggacaagg 59
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 201 tctttgagcatttcttctagtattgttgtgacaagaaaaaaaaaatcaatgaggacaagg 260
Query: 60 tcagggtcccttttaagtatgcttaaattctatttaccctaaatttctacactctttact 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagggtcccttttaagtatgcttaaattctatttaccctaaatttctacactctttact 320
Query: 120 atctaccaaaaggaccacatgtttagctaatgttggcatttagtgtgttattttatcttg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atctaccaaaaggaccacatgtttagctaatgttggcatttagtgtgttattttgtcttg 380
Query: 180 aataattttgaagagacattgttttacacacacacacacacacacacacacacacacaca 239
|||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 aataattttgaagagacattgttttatacacacacacacac------------------- 421
Query: 240 cacacctccagagatgtgtgtgtgtgtgtgtgtgtgtgt 278
|||||||||| |||||||||||||||||||||||
Sbjct: 422 -----ctccagagatatgtgtgtgtgtgtgtgtgtgtgt 455
Score = 78.1 bits (40), Expect = 6e-19
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 207 acacacacacacacacacacacacacacacacacacacctccagagatgtgtgtgtgtgt 266
||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||
Sbjct: 467 acacacacacacacacacacacacacacacacacatatctctggaggtgtgtgtgtgtgt 408
Score = 64.5 bits (33), Expect = 7e-15
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 205 acacacacacacacacacacacacacacacaca 237
|||||||||||||||||||||||||||||||||
Sbjct: 465 acacacacacacacacacacacacacacacaca 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 4
Length of query: 278
Length of database: 679
Length adjustment: 9
Effective length of query: 269
Effective length of database: 670
Effective search space: 180230
Effective search space used: 180230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
