BAC Information

Click to search

BAC

Clone NameMSMg01-183N14
Chromosome1 (Build37)
Map Location 164,848,952 - 164,849,177
singlet/doubletsinglet
Overlap geneFmo6
Upstream genePigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2
Downstream geneFmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183N14.T7 (MSMg01no183_n14.b1)MSMg01-183N14.TJ (MSMg01no183_n14.g1)
ACCAG376314AG376315
length710819
length of high quality
(start - end)
650 (45 - 694)226 (77 - 302)
definitionCHROMAT_FILE: MSMg01no183_n14.b1 PHD_FILE: MSMg01no183_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:58 2005CHROMAT_FILE: MSMg01no183_n14.g1 PHD_FILE: MSMg01no183_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAATACTGAATGGCTGAGAAACACCTAAAAAAATGTT
CAACATTCTTAGTCATCAGGGAAATGCAAATTAAAACAACCCTGAGATTC
TACCTCATACCTCTCAGAATGGTGAAGATCAAAAACTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGATGAAGAGGAACACTCCTCTATTGCTGGTAGG
ATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGTGGCTCTTCAGA
AAATTGGACAAAGTACTACCTGAGGACTCAGCAATACCACTCCTGGGCAT
ATAGCCAGAAGATGCTCCAACATGTAATAAGGACCCATACTCCACTATGT
TCATAGCAGCCCCATTTATAATAGTCAGGAGCTGGAAAGAACCCAGATGT
CCCTCCACAGAGGAATGGATATGGAAAATGTGGTACATTTACACAATGCA
GTACTAGTCAGCTATTAAAATAGACTTTTCAACCAAAAATAATCAGAAGA
GATGGGGAAAGATACTTCGTACTCATCAAAGGAAAAATTCACCAAGATGA
AGTCTCAATTCTAAAATCCAAATTAAAAGCCATAGAAAACAATCTGGTGG
CAAAAAAATAATAACATGCAAACATCATTAGAAATTGGCAATTAAATCTT
ACCTTTTCAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATGTCAGTATTCAGCTGGGTGT
TTAATAAGGAATGGGAGAAAGCAAGCTGTAGCTTGCTTGGCAAACATCGG
CACTTGGGACCGACTGTAATTTACTTATCTCTGTAACAATGGAAGAAGGC
TACTAAGATAGATATTCGAGGTGCATGAACACCACCCAGCCACTGTGAAC
TTCTGACTGTGTGTTGGCATCCTATAGCTAGTATTTGGTGAGTGCTTTAC
TAGCAGGAGAGCGACCATATTTTTTTATTTTCATTCCCTCCCCACTGCCT
CATTTTTTTTTTTTTCCCCCCCCCCCCCCCCGTTTTTATCTCCCCTTCCT
TTATTTTTTTTTTTCCCCCCCCCCTTTAAAAAAAAAATTTTTTCCGCCCG
TGCCCCCCCTACTCCCCCCCTTCTCTTCCCTATTCCCCCCCCTACTTCCC
CTCTTCTTTCCTTCCCCCCCTTCATCTCCACCACCATTTTTTTGACATCT
TATCCCACCTTTTTCCATATTTCATCATTCCCCTTAAACCACCCATCCTC
CCCCATTTCCCCTTTTTCTCCCCTTACTTTATATTCCTCCTAACTTCCCT
CCCCCCCTATCCCCCTTTTATTACCCCCCCCCTCCCTATTCTTTCTCCCC
CACCCTCCTCTTCCCCCCCCCCTCTCCCCTCTTCATTCTGCGTTAATATT
CCGCCCCCCGCCCCCGCAACCGCACCTTAATTCTATTCCCTATCTCTCTC
ATGTTTTTTACCCCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_n14.g1 MSMg01no183_n14.g1 CHROMAT_FILE:
MSMg01no183_n14.g1 PHD_FILE: MSMg01no183_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:58 2005
         (226 letters)



>mm_chr1_164848752_164849377
          Length = 626

 Score =  422 bits (218), Expect = e-122
 Identities = 224/226 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgtcagtattcagctgggtgtttaataaggaatgggagaaagcaagctgtagcttgc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgtcagtgttcagctgggtgtttaataaggaatgggagaaagcaagctgtagcttgc 260

                                                                       
Query: 61  ttggcaaacatcggcacttgggaccgactgtaatttacttatctctgtaacaatggaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggcaaacatcggcacttgggaccgactgtaatttacttatctctgtaacaatggaaga 320

                                                                       
Query: 121 aggctactaagatagatattcgaggtgcatgaacaccacccagccactgtgaacttctga 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aggctactaagatagatattcgaggtgtatgaacaccacccagccactgtgaacttctga 380

                                                         
Query: 181 ctgtgtgttggcatcctatagctagtatttggtgagtgctttacta 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgtgttggcatcctatagctagtatttggtgagtgctttacta 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)