BAC Information

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BAC

Clone NameMSMg01-183N16
Chromosome1 (Build37)
Map Location 128,528,185 - 128,528,363
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneLypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183N16.T7 (MSMg01no183_n16.b1)MSMg01-183N16.TJ (MSMg01no183_n16.g1)
ACCAG376318AG376319
length699759
length of high quality
(start - end)
183 (45 - 227)480 (75 - 554)
definitionCHROMAT_FILE: MSMg01no183_n16.b1 PHD_FILE: MSMg01no183_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:59 2005CHROMAT_FILE: MSMg01no183_n16.g1 PHD_FILE: MSMg01no183_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGTACACACTCACCTCTCTGTCTTCCAACTGGAGACACCTACCA
CTGCCCCTCACCACCAAGTCTTCCTGGAAGGACACCTTCTGCCCTTAAAC
TGCATTGCTGGTGTGCTTTGTTTTGTTTTGTTTTCATAGTCATGAGAAAT
GTAACATGCACACACACACACACACACACACACACACGCACACAATCACA
CACACACGAGAGAATGATCATGGCTACTACCACCAAACCTTAACCCCAAA
TGACCTTTAGATAAATGAACCTTTCTTCTTCACAAGTCGGTTATCTCAGG
TATTTAGCAACAGTGATGGAGATTGAGCCAATGCAACAGTCTTGATGCAT
CTACCTGAGGCTCTTTCACACAGTGCTCCCAATGACTGTCCATGCGAGTG
GCTCATTGGTCTCACAGAGCTCTATGCTCATTGCTGAACAGACTCATCTC
AGTAATCTGCATAGACTATGAATATACATGAAACAATAGACATAGTAACC
TGCAAAAGCAGAGGTTGGTAGCACAATGTCTTAAGTATGTATGCTGGCTA
ATTTTATGTCAGTTTGACACTGGATAGAGCCATCTGAGACGATAGAACTC
CAATTAACAAAATGTCTCCAGACTGTACTGTATGAAAGCCTGTACTGTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCCTTTATAAAGGCATTAATCCCAT
CCCTGCAGTAGCACCTCATGGTCTAAGCACCCCTAGGAGATCTCATCTTT
TACAAATCAATTTGGAAAGATCAGGAGGACTCAAATCCAGACAAAAAAAA
AAAAACAACAACAACAACAACAACAACAACAGAAAACCAAACAATGCTAA
GAGCTGGAGAAAGTCTTCCCAAGGAAGAGCACATTAATTGGCTATCCAAT
GCCAATGATCAGCCCTGAAATCATACATGCAGATAACATCATATGGACTG
AAAGGTTGTATTTATATATTTACGAACTATATATTTATATATGTATTCAT
ATATATTCACACACATACGTACAAATGCATACATATACATACACACACAC
ACACACACACACACACACACATATATATATATATATATATATATATATAT
GAAGAAGCCATGAGCTTGGAAGAGCAAAGGGGAAATGGGTATATATGGAA
GGCCCTATATCCCGCTGTTCCCCCGTTGCCGTGTCACACCAACACTAATT
CCCCCTTCCTCCCATCCTCCTCTTTATTAATATTCCCGTCCTCTCCTTTT
TTCTCCCATCCTACCTCGACCCCTTAAATCTTCGATTTTATCCTCTAATT
CCCCCCCCCCCCACAATCCATCCTTTTTTATTCCCTAATTTTACTTTTTA
TTCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_n16.b1 MSMg01no183_n16.b1 CHROMAT_FILE:
MSMg01no183_n16.b1 PHD_FILE: MSMg01no183_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:59 2005
         (183 letters)



>mm_chr1_128527982_128528563
          Length = 582

 Score =  325 bits (168), Expect = 1e-93
 Identities = 177/180 (98%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctgtacacactcacctctctgtcttccaactggagacacctaccactgcccc 63
           |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaactccctgga-acactcacctctctgtcttccaactggagacacctaccactgcccc 262

                                                                       
Query: 64  tcaccaccaagtcttcctggaaggacaccttctgcccttaaactgcattgctggtgtgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcaccaccaagtcttcctggaaggacaccttctgcccttaaactgcattgctggtgtgct 322

                                                                       
Query: 124 ttgttttgttttgttttcatagtcatgagaaatgtaacatgcacacacacacacacacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgttttgttttgttttcatagtcatgagaaatgtaacatgcacacacacacacacacac 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 582
Length adjustment: 8
Effective length of query: 175
Effective length of database: 574
Effective search space:   100450
Effective search space used:   100450
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)