Query= MSMg01no183_o14.b1 MSMg01no183_o14.b1 CHROMAT_FILE:
MSMg01no183_o14.b1 PHD_FILE: MSMg01no183_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:03 2005
(583 letters)
>mm_chr1_63724606_63725586
Length = 981
Score = 1062 bits (549), Expect = 0.0
Identities = 574/583 (98%), Gaps = 2/583 (0%)
Strand = Plus / Minus
Query: 1 caaattacgatctgtgcaaactctttgccaatgtaagtacaagttctttgtaacactcga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 781 caaattacgatctgtgcaaactctttgccaatgtaagtacaagttctttgtaacactcaa 722
Query: 61 gacaatctgaccctaatgtgtgatgttcagttcatgaagagaagcaaaatctgccccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gacaatctgaccctaatgtgtgatgttcagttcatgaagagaagcaaaatctgccccaca 662
Query: 121 caggtaacttcctggatcaggaaagtgggacctgtgcattgaagccattggtaacataca 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 661 caggtaacttcctggatcaggaaagtgggacctgtgcattgaagtcattggtaacataca 602
Query: 181 ggagatgggggtggagaagagaccattgtaagcattccactcatatgttgcttcactgac 240
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 601 ggagatgggggtggagaagagaccattgtgagcagtccactcatatgttgcttcactgac 542
Query: 241 agtaataggaaaggtaggcaagaatttttgaaagcaaaaagctccaaactccaagataaa 300
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 541 agcaataggaaaggtaggcaaggatttttgaaagcaaaaagctccaaactccaagataaa 482
Query: 301 gtatcccaggagctccaggtagcaagatccagagactatcactattcggaatcttgtgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtatcccaggagctccaggtagcaagatccagagactatcactattcggaatcttgtgag 422
Query: 361 attaatggaccactcttttatctgcatgactgtaatttagaactctcacaagacaagaac 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attaatggaccactcctttatctgcatgactgtaatttagaactctcacaagacaagaac 362
Query: 421 cccctgcattccagatgccaggcccagatgatagaagcttgtgatcaatgacaaaaacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cccctgcattccagatgccaggcccagatgatagaagcttgtgatcaatgacaaaaac-- 304
Query: 481 aaaaaaaaagtttacagctgctgccacctgtggccaggttttattgaagaggcattcatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaaaaaaaagtttacagctgctgccacctgtggccaggttttattgaagaggcattcatg 244
Query: 541 aaacctgctcccctatgccatagactctcccttcaaagcaata 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaacctgctcccctatgccatagactctcccttcaaagcaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 981
Length adjustment: 10
Effective length of query: 573
Effective length of database: 971
Effective search space: 556383
Effective search space used: 556383
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_o14.g1 MSMg01no183_o14.g1 CHROMAT_FILE:
MSMg01no183_o14.g1 PHD_FILE: MSMg01no183_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:03 2005
(289 letters)
>mm_chr1_63584947_63585635
Length = 689
Score = 528 bits (273), Expect = e-154
Identities = 285/289 (98%)
Strand = Plus / Plus
Query: 1 tttttatttttttgtagacagacttaattttctgtatcagcttttaaacaactttctttg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tttttatttttttgtagacagacttaattttctgtatcagcttttaaataactttctttg 260
Query: 61 agatataaaagtaagaaggaacatgggtttttggaatcacatataacttagaattgttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatataaaagtaagaaggaacatgggtttttggaatcacatataacttagaattgttcc 320
Query: 121 ctggtaaggaaaaccaagtgttcaggtgttaacttgcgctaaaaaaggcttaaatctgaa 180
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctggtaaggaaaaccaaatgttcaggtgtcaacttgcgctaaaaaaggcttaaatctgaa 380
Query: 181 tttctgaagggtgttggtggggctgtcttcatgtgaaccgcttttctgactgagaatttt 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tttctgaagggtgttggtggggctgtcttcatctgaaccgcttttctgactgagaatttt 440
Query: 241 ctaactactttccaaacccaatgattgtggcaagttgtggaattatgtc 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaactactttccaaacccaatgattgtggcaagttgtggaattatgtc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
