BAC Information

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BAC

Clone NameMSMg01-184B17
Chromosome1 (Build37)
Map Location 142,118,699 - 142,201,408
singlet/doubletdoublet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184B17.T7 (MSMg01no184_b17.b1)MSMg01-184B17.TJ (MSMg01no184_b17.g1)
ACCAG376491AG376492
length826739
length of high quality
(start - end)
171 (60 - 230)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no184_b17.b1 PHD_FILE: MSMg01no184_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:20 2005CHROMAT_FILE: MSMg01no184_b17.g1 PHD_FILE: MSMg01no184_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,118,699 - 142,118,866)(142,201,128 - 142,201,408)
sequence
GGTGGGAGAGGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCAGAGACTGTTTTTCCAAGCAGAGCAATTCAG
TGAGAAGGCAATTTGAATCAGTCAGCTAATGTTTGAATTCTTTGGACCCA
GCTTATTTTTCGAAGGCCTAGAAAGTTTGGGAGGCGGTGCCAACCCAGAT
GAACTAGATCCCTGTGGATGGATTGGTGAAGTCCACCCCCCGCACCCCGT
TTCCCCCCCTTCCCCTTTTTTTTATTAACAACACCCTCCCCTTTATCTCC
CCCAAACACACTCCTCTTTTTTAGAACACACTCTTTTATTAACAAAACCC
CCCCCCCCACCATACCAACTCCTTTTTTTTTTTTCCCCCCCCCCCCCCCC
TCTTTTTTTTGTCCCCCTTATTTTCCCTCTTTTTTTTCCCCCCCCCCATA
ATAAAAAAAATCCCTTCCTTGCCGTTGTTTTTCCCGCCCTCTCTTCTCCC
CACCTCCTTTTTCTTCTCCAATCTATTTTCACCTTCCCTCTTTTTTTTTT
TCTCCCCCTCTCCTCTTTATTTTCCCCTTCATCCCATTTCCCCCCACCCC
GCCCCCTCTGTTTTGCATTATTTATATTGCATTTTTAACTCTTTCAACCT
TTCTTTATTCCTTTCCCTTCTCCCCCNCTTCGCTTTGCATCATCAATTTC
CTAACCCCTTGATCCACATTTTTTTACACCCCCTTCGCTTCCCCCAAATT
TTCCCTCTCCCTCTTATTTTATTATTCCCCCCTCCTCCCATCGCACCATA
TATTCGTATCCTCCTCCCCATTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTATAAATTGTACACTTGATAGG
CTTCTCCCCACACAGTGTGACATGGACTTTGTCTTCGTACTTGTTCTTGG
GTTCTTTTTAAACCATTCTTGTAAGCTGTCATTCCGTAAAACAGGTTATC
ATTCACTGCTCCAGTCCTGTGGAACCACTTCAAGCTCTTGAAGGACATTG
CAGGACAGACTTTAATCTATTTTGAGGCCTGTTGTGTGATGAAGAAGATT
TGAGGGCTCTATGTTAGTCATTAAGTTCCAGAGAACTAATTGAGATAGAA
AAGTAAGGTTGTTGAACACCCGCCTCGCAATAATCTGGGTAATCAAACTT
CACACACTTCTTGCCCCCTAAGACAATGATCTTTACAAACTTACCATGGT
CTCTGGGGTGTCATGATATGATAGCAATCTGCTCTGAAGCCTCAAAAATA
ACTGAGTAATAAAACTTCAACTTCTGCATTTTTTCAAATACTTCTTACAC
ATTAGGAATTTTAAGTATTTAGCTTGCACTTTTTTTTATTTAACTACCTT
TCAAATATATTGACATTTATATATATATCTTAACAATTACTCATGAGCTG
ATATAATACTACTGTATTTAGGTTGTTTTATAATCTATATTTTATTTTTT
ATTTATATTAAGCATAATAATTTAAGCACTACACTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_b17.b1 MSMg01no184_b17.b1 CHROMAT_FILE:
MSMg01no184_b17.b1 PHD_FILE: MSMg01no184_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:20 2005
         (171 letters)



>mm_chr1_142118496_142119066
          Length = 571

 Score =  294 bits (152), Expect = 2e-84
 Identities = 164/168 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagagactgtttttccaagcagagcaattcagtgagaaggcaatttgaatcagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagagactgtttttccaagcagagcaattcagtgagaaggcaatttgaatcagt 263

                                                                       
Query: 64  cagctaatgtttgaattctttggacccagcttatttttcgaaggcctagaaagtttggga 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagctaatgtttgaatgctttggacccagcttatttttcgaaggcctagaaagtttggga 323

                                                           
Query: 124 ggcggtgccaacccagatgaactagatccctgtggatggattggtgaa 171
           || || |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtggggccaactcagatgaactagatccctgtggatggattggtgaa 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no184_b17.g1 MSMg01no184_b17.g1 CHROMAT_FILE:
MSMg01no184_b17.g1 PHD_FILE: MSMg01no184_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:20 2005
         (281 letters)



>mm_chr1_142200928_142201608
          Length = 681

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctataaattgtacacttgataggcttctccccacacagtgtgacatggactttgtcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctataaattgtacacttgataggcttctccccacacagtgtgacatggactttgtcttc 422

                                                                       
Query: 61  gtacttgttcttgggttctttttaaaccattcttgtaagctgtcattccgtaaaacaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtacttgttcttgggttctttttaaaccattcttgtaagctgtcattccgtaaaacaggt 362

                                                                       
Query: 121 tatcattcactgctccagtcctgtggaaccacttcaagctcttgaaggacattgcaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatcattcactgctccagtcctgtggaaccacttcaagctcttgaaggacattgcaggac 302

                                                                       
Query: 181 agactttaatctattttgaggcctgttgtgtgatgaagaagatttgagggctctatgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agactttaatctattttgaggcctgttgtgtgatgaagaagatttgagggctctatgtta 242

                                                    
Query: 241 gtcattaagttccagagaactaattgagatagaaaagtaag 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtcattaagttccagagaactaattgagatagaaaagtaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)