BAC Information

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BAC

Clone NameMSMg01-184F03
Chromosome1 (Build37)
Map Location 122,624,363 - 122,624,525
singlet/doubletsinglet
Overlap genenone
Upstream genePtpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
Downstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184F03.T7 (MSMg01no184_f03.b1)MSMg01-184F03.TJ (MSMg01no184_f03.g1)
ACCAG376643AG376644
length836811
length of high quality
(start - end)
172 (61 - 232)142 (78 - 219)
definitionCHROMAT_FILE: MSMg01no184_f03.b1 PHD_FILE: MSMg01no184_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:38 2005CHROMAT_FILE: MSMg01no184_f03.g1 PHD_FILE: MSMg01no184_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTGTGGTTTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCGTCTCAGCTTTTTTTCTTTCACTTTTTTTT
TTTGGTGGTCCTAAAAGTAATAAAGAGTTATAACTGCATTCCAAGTTATC
TTTGGATCGTTGACGATTCCATGACCAAAGATTTGTCTGTCCTGAATGCG
GATGGAGTTTGAGCTGATTTATCCCCTGAAGATTGAGGTCTGTCTGCTGC
TTCATTGAGTCATAAACTACTATCTGTGTTCTCTGGTTCTGATTATCATG
CTCCAGCCACTGGCCCCGAGTTTTCTTTCCTTTATTCACTTAATATACCC
GCATCCCGACAATATAAGATGCTTTTTTTTTTTCTCCCCCCCCCCTCCCC
TACTCTATTCTCCCTTTCATCTTTTCCATTTTGTTTCCCCCCCCTTTTAC
CATTTTTTTTTTTACCTCCCCTTCTTTACCCCCCCCCCCGTTCTTCCCTC
ATTTTTTCCTTTCCCCATCTATTTACTACATTCACATTATTTCTTTTTTT
TCTACCCCTCTCCATTATTTTATTCCCCTTAAATTCATTATTCCCCCCCC
CCCCACGCCTATATATACCTCTACTTACTATCACAATTTTTCTCTTTATC
ATTCTTACCTATTAACCCTTAACAAACTTCATTCCTTCATTCTTTACCAA
TTCTATCCATAACTCTCTCATCCCCATTAATCTCCTAATACCATCCTTTA
CCGCCGATTATTTCCCCCTTCCCCTTTATTTTTTTTTTACCCCCCGTCCC
TCCCATCATATATGTCTAACTCTAACCCAAATAATG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTGTATAAGTTGCCTTGGT
CATGGTGTTTTATCACAGCAATAGAAAAGTAACTGATATGGAAGTTGAGC
CCAGGGAGTGGGCTCTTGCTGTGACCTGACCATAATGAGTTTGGGAGGAT
AGTGGGTAATTTTTTNCCCNNCCCCCCCCCCCCCCCCNCNCCCCCCCCCC
CCTCCCTTCCCCCTTTCTCCCTCCCTTTTCCCCCTTATTTNCCTTTCCCC
TTTCCTCCCCCTTTTCTTTTTTTCCCTTCCATATTTTCCCCCTATTTCCC
CTTTTTTTTTTTTTTCCCCCCCCCCCCCCNAAAANAATNANAATTTATAA
TATTTTTTTTGGCCCCCCCCTAAAAAAAAAAAATTCTTTCGGTGGGCGGG
TGCTTTTTCGTCTACTCAACTTCTGTTGTTATTTTTTCTACCTTAGGTCC
TCACCTCCTCCTTCTTTTCTTTTTTATTGCTTAGCTTTGCCCCTGTTGCC
GATTTGTTTTTTTTTCTTTAGTCTCCTTCTCCTTTATTCTCCGGCGTCTG
CGTGTCATCTATGTCCACTCTATTTTCCTCTCTTCCTATTAATCTGCGCT
CTAGCCTTTCTTTTTTGTATACCGTTTTTGTCTAACACCGCCCCACTATC
ACCTTTTCTACTCCCTCTATATTTCGATACCCTATTCTCTAGTGCGTGAG
TCATTGTCTGTCTTTTCCTCCGTCTGCGTGTTCTTCTCCTTTTCGCCACC
TCTCCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_f03.b1 MSMg01no184_f03.b1 CHROMAT_FILE:
MSMg01no184_f03.b1 PHD_FILE: MSMg01no184_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:38 2005
         (172 letters)



>mm_chr1_122624159_122624729
          Length = 571

 Score =  279 bits (144), Expect = 9e-80
 Identities = 159/164 (96%), Gaps = 1/164 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgtctcagctttttttctttcactttttttttttggtggtcctaaaagtaataaa 64
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcgtctcagctttttttctttcac-ttttttttttggtggtcctacaagtaataaa 263

                                                                       
Query: 65  gagttataactgcattccaagttatctttggatcgttgacgattccatgaccaaagattt 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 gagttataactgcattccaagttatctttggatcgttgacggttccatgaccaaagattt 323

                                                       
Query: 125 gtctgtcctgaatgcggatggagtttgagctgatttatcccctg 168
           |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 324 gtctgtcctgaaggcggatggagtttgagttgatttatcccctg 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 571
Length adjustment: 8
Effective length of query: 164
Effective length of database: 563
Effective search space:    92332
Effective search space used:    92332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)