Query= MSMg01no185_a09.b1 MSMg01no185_a09.b1 CHROMAT_FILE:
MSMg01no185_a09.b1 PHD_FILE: MSMg01no185_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:38 2005
(311 letters)
>mm_chr1_138288970_138289682
Length = 713
Score = 532 bits (275), Expect = e-155
Identities = 300/309 (97%), Gaps = 2/309 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatttccctgtaggagtgaattttagtgaaaaccaattccatgagaaatgatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcaatttccctgtaggagtgaattttagtgaaaaccaattccatgagaaatgatca 454
Query: 65 aatgtgtttcctttcggcctttgccctgaagcccctcagtgctcaggggaaacggcagtg 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 453 aatgtgtttcctttcggcctttgccctgaagcccctcagtgctcagtggaaacggcagtg 394
Query: 125 gccagtgacatcatctgtctgac--agtccttctcaggctctgaggcccgagacgtcctt 182
||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 393 gccagtgacatcacctgtctgacggtgtccttctcaggctctgaggcccgagatgtcctt 334
Query: 183 ccctgcctttgaacacagcctgcagccacattttacttggttccctttttcccacatttg 242
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 333 ccctgcctttgaacacagcctgcagccacactttacttggttccccttttcccacatttg 274
Query: 243 gttatatttctttctttttcatttaaaaaaatatgcatgtcttgctgtgcatcccaggct 302
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 273 gttatatttctttctttttcatttaaaaaaatatgcacgtcttgctgtgcatcccaggct 214
Query: 303 gtcctcaaa 311
|||||||||
Sbjct: 213 gtcctcaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 713
Length adjustment: 9
Effective length of query: 302
Effective length of database: 704
Effective search space: 212608
Effective search space used: 212608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_a09.g1 MSMg01no185_a09.g1 CHROMAT_FILE:
MSMg01no185_a09.g1 PHD_FILE: MSMg01no185_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:38 2005
(426 letters)
>mm_chr1_138140374_138141199
Length = 826
Score = 704 bits (364), Expect = 0.0
Identities = 412/430 (95%), Gaps = 4/430 (0%)
Strand = Plus / Plus
Query: 1 aggacctctggaagagcagccagtgctcttaaccactgagtcatctctccagccccttgt 60
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 197 aggatctctggaagagcagccagtgctcttaaccactgagccatctctccagccccttgt 256
Query: 61 actgtagtttgaataatgtccctgc----ccccccgaaagttcatatgttgtgaagctga 116
||| |||||||||||||||||| || ||||||||||||| |||||||| ||||||||
Sbjct: 257 actatagtttgaataatgtccccgccccgccccccgaaagtttatatgttgcgaagctga 316
Query: 117 tatcccaattcgtaaattggtggctttgaaggtggagtcctgggtagtaatcaggattag 176
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatcccaattcgtaagttggtggctttgaaggtggagtcctgggtagtaatcaggattag 376
Query: 177 atgagactatgaaggcagagccctctgtgtggtaagtactggcgttggaggctgaagacc 236
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atgaggctatgaaggcagagccctctgtgtggtaagtactggcgttggaggctgaagacc 436
Query: 237 cccagatctctggcctgcttaatctcatagtgcgatggcaaaaacatattttcccttgcc 296
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 437 cccagatctctggcctgcttaatctcatagtgcgatggcaaaaacataggctcccttgcc 496
Query: 297 agacatcagcaccatggtcttgaacttctcagagtccagaaacaaccctagggttggttt 356
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 497 agagatcagcaccatggtcttgaacttctcagagtccagaaataaccctagggttggttt 556
Query: 357 ttttctggtgttttaaaaatttgtttattgtctttgttttatacatggtcttagtatgta 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tattctggtgttttaaaaatttgtttattgtctttgttttatacatggtcttagtatgta 616
Query: 417 gcctgcactg 426
||||||||||
Sbjct: 617 gcctgcactg 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
