Query= MSMg01no185_f20.b1 MSMg01no185_f20.b1 CHROMAT_FILE:
MSMg01no185_f20.b1 PHD_FILE: MSMg01no185_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:02 2005
(276 letters)
>mm_chr1_140410308_140410984
Length = 677
Score = 505 bits (261), Expect = e-147
Identities = 270/273 (98%), Gaps = 1/273 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaagtctattaaaattcactttggtctccatatgaaataattttagactgaca 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcttaagtctattaaaattcactttggtctccatatgaaataattttagactgata 264
Query: 65 cattacccagatctggagaggtacataaatgtgtaatccctaagtagaacatttgcaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattacccagatctggagaggtacataaatgtgtaatccctaagtagaacatttgcaaaa 324
Query: 125 tgtagtaaaactc-gactgaatccactttgaattgttcaaaattgttgtgtgattcggat 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtagtaaaactcagactgaatccactttgaattgttcaaaattgttgtgtgattcggat 384
Query: 184 ttcaggttaatcattagttcggtaaagctcaaacactacagcctactcaagagtgactgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcaggttaatcattagttcggtaaagctcaaacactacagcctactcaagagtgactgc 444
Query: 244 aaggcagcatttaaacaagtggcatgtgtgtac 276
|| ||||||||||||||||||||||||||||||
Sbjct: 445 aacgcagcatttaaacaagtggcatgtgtgtac 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space: 178356
Effective search space used: 178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no185_f20.g1 MSMg01no185_f20.g1 CHROMAT_FILE:
MSMg01no185_f20.g1 PHD_FILE: MSMg01no185_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:02 2005
(208 letters)
>mm_chr1_140550290_140550897
Length = 608
Score = 340 bits (176), Expect = 3e-98
Identities = 205/224 (91%), Gaps = 16/224 (7%)
Strand = Plus / Minus
Query: 1 tgactcttgcctattggttggcccaatgtctctttcctccatttccttcatttgggaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgactcttgcctattggttggcccaatgtctctttcctccatttccttcatttgggaaat 257
Query: 61 ggagacataaacataactcctcacacaaagtccttgatgaaggagtcatgtgtttgtctt 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 256 ggagacataaacataactcctcacacaaagtccttgatgaaggagacatgtgtttgtctt 197
Query: 121 tctctctctctctctctctctctccctccct-tc---------------ctccctccctc 164
|||||||||||||||||||||||| ||| || || |||||||||||
Sbjct: 196 tctctctctctctctctctctctctctctctctctctctctctctctctctccctccctc 137
Query: 165 cccctttctctctctttctttctttctttctttctttctttctt 208
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cccctttctctctctttctttctttctttctttctttctttctt 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space: 119201
Effective search space used: 119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
