BAC Information

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BAC

Clone NameMSMg01-185G02
Chromosome1 (Build37)
Map Location 107,971,525 - 107,971,832
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2
Downstream geneEG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185G02.T7 (MSMg01no185_g02.b1)MSMg01-185G02.TJ (MSMg01no185_g02.g1)
ACCAG377389AG377390
length695793
length of high quality
(start - end)
324 (8 - 331)---
definitionCHROMAT_FILE: MSMg01no185_g02.b1 PHD_FILE: MSMg01no185_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:03 2005CHROMAT_FILE: MSMg01no185_g02.g1 PHD_FILE: MSMg01no185_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATAGGGAGAGGATCCGCGGAATTCTCCATCTTCTACACGGGGCAG
AGTCTCTCGCTTGAAGTCAGAGCTTGCAGATTAAACTTCTGTAGCTAAGC
AGCTTTCTCCAGGGCTCTCCTCCTCCTAAGTGCCTGAACTGTAAGCAGGT
CACCTGTAAAAGTAACTTCAATTCCTCTTATGTAATTGTCATATCTGAGA
CTTACTGCTAACTCAGCTCACCCTTTCTGGTTCTTTCTGAACTCTAGCTG
GCTAGTCCAACTTAGCTGTTCTGGCTCAAACTGCTCTCCAAGGTTCAATC
TGGCTTCTCTCAGCTTCTCGCTGAATTGCTCTGTTTGGTCTCACCCTACC
TCTGGCAATTTGTTATAAGCTTCTGGCTACTCCTTACCCTCTGGCTTCTA
TTGTCTCTGCTGCCCTGCACACAGCTGCATGGAAAGAACTCAACTCCATT
GACTCCCCACCTGTTAACTGACAGAACTGAACTCACCTGAAGTGCACTCA
TTGAACTGCCCTCTAGTTATATGTCACTTTCAAACACGGTTGCTTCCTTC
TACAAAACAAAAACAAAACCAACCTTACCTACATTGTGTGGCATTAAAAG
TTTGTACTAACGGTGTGTTGTATTCCAGCCAGCAGTATTAAAGCTATGTG
ACCCACCTGCATTCCAGCTGGATCACCCAGACCTAAGAAAACCCG
CTTTTAGTCCACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAA
AGGAGGNGAACNANAGAATTTCCCCAAAAACCCAGNNNCNNCNNGANANG
NGGNACNGNCNNAGCAGAAAGTATTCGCCCCGCGAGAAAGGNACAGAGGN
GGNANNNNCAGNAGCAAAAGCAGCCAGAGAGGGCCAGCAAAGACCCAGGC
CCCGAGGNCAAGGAGGAAGGNCCGAGGAAGACCAGCCGGCCACCGAGGAG
CGAACGGCAAAGGAGCCACCCCAGGCACAGGGCACAGCAAGCAGAGCACA
CACAGAAAAGCCGGCCCCCAGTTTTTTTTTTTGCAGAACAAGAAAACAGC
CCCCGCACACAGAGGATGTAGAGCCCCCCCCCTACGATGCGAGCCAGTTC
TCCGCATACATGGCTACAGTCCGCCCACACAGAAGAATAAAATCTGAACC
CCTGCTGTCTCTTGAATCCGCATTCTACCGGCAATAAATTCCACTTCATG
TATCCTTCACTCGCATCCTAGCTCTGCGATCTACCCTTTGCGAGAATTCT
CGTACAACTATATATATTACACCTACCACCATGCCTTTTACTACCTTAAA
TTACCATTCAAGATATTCCCTATTCGCGCCCCCACTAATAATTTTTAATT
TCATTTGCCTTGTTACTTGACTTATATTGTTTTCCCCCACTCTCATAAAC
CACCCTAATTCACTAATTACTTCATATTATACATCTTTCTATTTTATAAC
ATCAAAGACATAAATCCGCTCTCCCGACATACACCACGACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_g02.b1 MSMg01no185_g02.b1 CHROMAT_FILE:
MSMg01no185_g02.b1 PHD_FILE: MSMg01no185_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:03 2005
         (324 letters)



>mm_chr1_107971486_107972209
          Length = 724

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctccatcttctacacggggcagagtctctcgcttgaagtcagagcttgcagatta 76
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaattctccatcttttacacggggcagagtctctcgcttgaagtcagagcttgcagatta 288

                                                                       
Query: 77  aacttctgtagctaagcagctttctccagggctctcctcctcctaagtgcctgaactgta 136
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 287 aacttctgtagctaagcagctttctccagggctcccctcctcctaagtgcctgaactgta 228

                                                                       
Query: 137 agcaggtcacctgtaaaagtaacttcaattcctcttatgtaattgtcatatctgagactt 196
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 agcaggtcacctgtagaagtaacttcaattcctcttatgtaattgtcatatctgagactt 168

                                                                       
Query: 197 actgctaactcagctcaccctttctggttctttctgaactctagctggctagtccaactt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 actgctaactcagctcaccctttctggttctttctgaactctagctggctagtccaactt 108

                                                                       
Query: 257 agctgttctggctcaaactgctctccaaggttcaatctggcttctctcagcttctcgctg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 agctgttctggctcaaactgctctccaaggttcaatctggcttctctcagcttctcgctg 48

                   
Query: 317 aattgctc 324
           ||||||||
Sbjct: 47  aattgctc 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)