BAC Information

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BAC

Clone NameMSMg01-185H23
Chromosome1 (Build37)
Map Location 52,628,923 - 52,815,341
singlet/doubletdoublet
Overlap geneGm553, EG433305, 5330401P04Rik, 2210010L05Rik
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, LOC100042094
Downstream geneInpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185H23.T7 (MSMg01no185_h23.b1)MSMg01-185H23.TJ (MSMg01no185_h23.g1)
ACCAG377470AG377471
length757760
length of high quality
(start - end)		317 (63 - 379)296 (90 - 385)
definitionCHROMAT_FILE: MSMg01no185_h23.b1 PHD_FILE: MSMg01no185_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:12 2005CHROMAT_FILE: MSMg01no185_h23.g1 PHD_FILE: MSMg01no185_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,628,923 - 52,629,235)(52,815,046 - 52,815,341)
sequence
NAATAATTNNNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCCTCAGGGAAATCAACAGTAACCAATTTT
TACACCCCTGGGTGTTACTCTGCTGTGTGATAGAGGGCTGCCTTCATATC
CAAAGCTTTCACTCTAGTGCAGTCTTTCATACGATTTCAAAAGAAGTTTC
TCCTCTTCCCTTTTCTTGTCACTTGTGATGTGTGACAGTTTTACTGGACG
GTAGGAAGTGCTTTCCTAGACCAAGATGACAACTGGTATATGCCAGGCCA
CCTGTTTATAACTCAATTTGATTTGTGAATAACAGTTTTAGTCTTCTCCC
CTGCTCCTTGGACTTCCGTTTTCACTGTGTTATGCTCCTCTTTCTCAGGT
CGACACAAGTTCCCTCCATTCCATTGCCCCCCACACAACCAGCTGTACAC
TTAACAATCTCATGTGGAATCATGGGCTAAAAGGAGAGAAGCCAGTTCTG
GTATCAGTGTTGGGTGAGGCTGCAAATGAGCTAACTCCCAAAGTCAGGGA
GCTTCAGGCCCATTCTGGATCCTCTCGGAAATAGGTCTGTTTAGTTCTCG
TCTCTGGGCCGCTCAGTGCAACCTCAGAGGTAAACCCAAAACACCTACTA
CTCTAAGTACAAGCCTATGACCTATCTATAGATGTGCCACATATTGTTCA
CTTCCCTCAGCCCAATGTCTAATTTTCCAAACATCCTCGATTGATCTCTT
TGCATCT

CCCCCCNNCCCAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCACAAAAGA
ACTAAGAACTTTGAATGCCCATGCACCTCTGGAAGAATTCTTGCTGGCTT
ATAGTCAAGCTAACAGGAGCACAAAGCCAGAGACTGAGAAGAAAATTCCA
GAACAAGGGAACAAAGGAAGGAAACATGCATGAAAAAAGCTGTTTCCTAG
CAACCGGACACAGTACTCATCCCATTAACTGGTTCCTTTCAGCATTGCTT
ACCCAGTATTAAATTCCACTGTTAGTCATCTCCATATCTTATGAGAGAAT
AGTTTTCAATTTAAAAATTTAAAGTAAGGTTGTCTAATCCGCCACGCTGA
GTAATAAAATGGAAGCACCCAGTTTACTAATACACACCATTAGTAAAAAG
CGTAACCAATTTTATATTCACTAACTAATCTAAAATCTCACAGAAGCATC
TACACAACGTAACTCTGTGCTTGTCCTACTGTGCTTCAGTTGGCCAACAT
GAACTCCAAATAACACTTGAAAACTATACCTTTGTACACCTTGGCACCAG
GGAAATAGAAAGCAGCAGAAAAAAAAAAAAACTCTCCACTCACCACCACA
CAAGCTGATCTTAGAATCCCAGTCTCTTCATCCAATAATATGAACCATGC
CATCTATCAGAACACACACATGTGCACATGCATGCACACATACACAAAGT
CATATGAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_h23.b1 MSMg01no185_h23.b1 CHROMAT_FILE:
MSMg01no185_h23.b1 PHD_FILE: MSMg01no185_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:12 2005
         (317 letters)



>mm_chr1_52628719_52629435
          Length = 717

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcagggaaatcaacagtaaccaatttttacacccctgggtgttactctgctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcagggaaatcaacagtaaccaatttttacacccctgggtgttactctgctgt 264

                                                                       
Query: 65  gtgatagagggctgccttcatatccaaagctttcactctagtgcagtctttcatacgatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgatagagggctgccttcatatccaaagctttcactctagtgcagtctttcatacgatt 324

                                                                       
Query: 125 tcaaaagaagtttctcctcttcccttttcttgtcacttgtgatgtgtgacagttttactg 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 tcaaaagaagtttctcctcttcccttttcttgtcacttgtgatgcgtgacagttttactg 384

                                                                       
Query: 185 gacggtaggaagtgctttcctagaccaagatgacaactggtatatgccaggccacctgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacggtaggaagtgctttcctagaccaagatgacaactggtatatgccaggccacctgtt 444

                                                                       
Query: 245 tataactcaatttgatttgtgaataacagttttagtcttctcccctgctccttggacttc 304
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 tataacttaatttgatttgtgaataacagttttagtcttctcccctgttccttggacttc 504

                        
Query: 305 cgttttcactgtg 317
           ||||| |||||||
Sbjct: 505 cgtttccactgtg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_h23.g1 MSMg01no185_h23.g1 CHROMAT_FILE:
MSMg01no185_h23.g1 PHD_FILE: MSMg01no185_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:12 2005
         (296 letters)



>mm_chr1_52814846_52815541
          Length = 696

 Score =  572 bits (296), Expect = e-168
 Identities = 296/296 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accacaaaagaactaagaactttgaatgcccatgcacctctggaagaattcttgctggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 accacaaaagaactaagaactttgaatgcccatgcacctctggaagaattcttgctggct 437

                                                                       
Query: 61  tatagtcaagctaacaggagcacaaagccagagactgagaagaaaattccagaacaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tatagtcaagctaacaggagcacaaagccagagactgagaagaaaattccagaacaaggg 377

                                                                       
Query: 121 aacaaaggaaggaaacatgcatgaaaaaagctgtttcctagcaaccggacacagtactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aacaaaggaaggaaacatgcatgaaaaaagctgtttcctagcaaccggacacagtactca 317

                                                                       
Query: 181 tcccattaactggttcctttcagcattgcttacccagtattaaattccactgttagtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcccattaactggttcctttcagcattgcttacccagtattaaattccactgttagtcat 257

                                                                   
Query: 241 ctccatatcttatgagagaatagttttcaatttaaaaatttaaagtaaggttgtct 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctccatatcttatgagagaatagttttcaatttaaaaatttaaagtaaggttgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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