BAC Information

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BAC

Clone NameMSMg01-185J15
Chromosome1 (Build37)
Map Location 67,109,319 - 67,244,645
singlet/doubletdoublet
Overlap geneCps1
Upstream geneEG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185J15.T7 (MSMg01no185_j15.b1)MSMg01-185J15.TJ (MSMg01no185_j15.g1)
ACCAG377542AG377543
length761758
length of high quality
(start - end)
367 (59 - 425)280 (91 - 370)
definitionCHROMAT_FILE: MSMg01no185_j15.b1 PHD_FILE: MSMg01no185_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:21 2005CHROMAT_FILE: MSMg01no185_j15.g1 PHD_FILE: MSMg01no185_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,109,319 - 67,109,681)(67,244,367 - 67,244,645)
sequence
AAACGGGCTCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTAGTGTATGCCAAGACCTTACTGCAGGCTAT
GCATTAAACTCTTGATGTGTCATGACACTTCATCCTCACCTCCATGACAC
GAGTTTAATCCTACAATTATTTTCAATCTACAGATGAGAAAACTGTCGAC
AAACAGGGTTAACTAAATTGCTCAAGGTCTAACAGCTCATAAGGTCTCAG
TCCAGGTAATTTAATGAAGTCATCCTGATTCCAAGAGTTATGCATTGAAG
TCATACAGAACTAAATATAAGAGTCCCTTCTTGAATACTCATTGGGAATG
GGTGTGGCTATTTTTCATGCAGTTGTATTTCCTCTGGCGTAAGACTGAGC
AATGCTCCAAACCCTGTTCTTCACCACCCCGCAGGAGATAAGTGCACTGC
TACACACATGCATCTTACTGGTGACACAATCATGAGAGGAGAACAGCCTT
CCTTACTGTGACTGACATTGTCCAATGTCTGTTCAATCATAAATGTGCTT
ATGGAGTTAGCAATTCAGGAGGATGGTCAATGTTCATATTTTATGATTTT
CTTACATCTAACATTAGCCATGATACTTTTCAACACTTTCGTTACCCTGA
CCATTGTTATGCTCCTACCGCCTTTTTCCACCCTTTGTTCTTATACTTCT
CTATTTTTTACTCAATTTTTTTATCCTCCCTTAATTTTTTTCCTCCCTTT
TTTTACCTTTN
CCTCTTAACCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCCTCGATG
TCAATGGACTGTAAAAAGATAAACCTCATTTAATGAAGGAAATTCAGAGA
GCACACTGACTTCACTATGCTAAACAGCTAAGCCAGCAATTAGAACACTG
AAGGTCTTGCTTTAACTCTTTGACTTAATTACTCTTAGAGGCCTAACCCA
GCAGTCCCTGAGGTCACTTGCAGCTCTGACATATTTTCTGACTGGAGAGT
CCTGTCCTTTTTAAGACTGTGTGACCTTCTAAGAATTAATCTAAGCATAA
TAAAGACCGAAATGACTCATTTNATCACTCTCCTCCCCACCCCTAGAGGC
AAAAGTACTCATATGAATGCTTTGCACCACCACATTAAAAAAAAAAAAGT
CTTATCAAAATATGTTTATCCACTTGCAGCTGCGTGCTCCTCAGTGTCAA
GTAATGCATGCACCTGATCATCAGTTTGGCTCTTCTCTGAACCACAATGC
AATACGGCAGGTAATAAATGAATCACATGAAACCAAAGGTTGAAGGAAAC
AGAAGAGCTTAGGTGGCCATAAAAAGGTTTTAGGTTTTATAGCCATAAAC
CAAATACAGATAGGTGCTACCGATAGGCGAACTCCACACCAGCGTTCCGT
AAAACACACTCCTTATCTACAGTTCTTTGTCACTTTAGATCTTTGTATAC
TTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_j15.b1 MSMg01no185_j15.b1 CHROMAT_FILE:
MSMg01no185_j15.b1 PHD_FILE: MSMg01no185_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:21 2005
         (367 letters)



>mm_chr1_67109115_67109881
          Length = 767

 Score =  679 bits (351), Expect = 0.0
 Identities = 360/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagtgtatgccaagaccttactgcaggctatgcattaaactcttgatgtgtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagtgtatgccaagaccttactgcaggctatgcattaaactcttgatgtgtca 264

                                                                       
Query: 65  tgacacttcatcctcacctccatgacacgagtttaatcctacaattattttcaatctaca 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgacactccatcctcacctccatgacacgagtttaatcctacaattattttcaatctaca 324

                                                                       
Query: 125 gatgagaaaactgtcgacaaacagggttaactaaattgctcaaggtctaacagctcataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgagaaaactgtcgacaaacagggttaactaaattgctcaaggtctaacagctcataa 384

                                                                       
Query: 185 ggtctcagtccaggtaatttaatgaagtcatcctgattccaagagttatgcattgaagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtctcagtccaggtaatttaatgaagtcatcctgattccaagagttatgcattgaagtc 444

                                                                       
Query: 245 atacagaactaaatataagagtcccttcttgaatactcattgggaatgggtgtggctatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atacagaactaaatataagagtcccttcttgaatactcattgggaatgggtgtggctatt 504

                                                                       
Query: 305 tttcatgcagttgtatttcctctggcgtaagactgagcaatgctccaaaccctgttcttc 364
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 tttcatgcagttgtatttcttctggtgtaagactgagcaatgctccaaaccctgttcttc 564

              
Query: 365 acc 367
           |||
Sbjct: 565 acc 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no185_j15.g1 MSMg01no185_j15.g1 CHROMAT_FILE:
MSMg01no185_j15.g1 PHD_FILE: MSMg01no185_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:21 2005
         (280 letters)



>mm_chr1_67244167_67244846
          Length = 680

 Score =  540 bits (279), Expect = e-158
 Identities = 279/279 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcctcgatgtcaatggactgtaaaaagataaacctcatttaatgaaggaaattcagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggcctcgatgtcaatggactgtaaaaagataaacctcatttaatgaaggaaattcagaga 420

                                                                       
Query: 61  gcacactgacttcactatgctaaacagctaagccagcaattagaacactgaaggtcttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcacactgacttcactatgctaaacagctaagccagcaattagaacactgaaggtcttgc 360

                                                                       
Query: 121 tttaactctttgacttaattactcttagaggcctaacccagcagtccctgaggtcacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tttaactctttgacttaattactcttagaggcctaacccagcagtccctgaggtcacttg 300

                                                                       
Query: 181 cagctctgacatattttctgactggagagtcctgtcctttttaagactgtgtgaccttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cagctctgacatattttctgactggagagtcctgtcctttttaagactgtgtgaccttct 240

                                                  
Query: 241 aagaattaatctaagcataataaagaccgaaatgactca 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aagaattaatctaagcataataaagaccgaaatgactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)