Query= MSMg01no185_m21.b1 MSMg01no185_m21.b1 CHROMAT_FILE:
MSMg01no185_m21.b1 PHD_FILE: MSMg01no185_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:36 2005
(321 letters)
>mm_chr1_40692272_40692992
Length = 721
Score = 611 bits (316), Expect = e-179
Identities = 316/316 (100%)
Strand = Plus / Minus
Query: 5 gaattcagaagcctgaagacctcgcactgtggtgctgagccagagcgccaggctgtactc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcagaagcctgaagacctcgcactgtggtgctgagccagagcgccaggctgtactc 461
Query: 65 ttaagacttgctgataacttctcagatggaaagccatctttccattctgactctccaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttaagacttgctgataacttctcagatggaaagccatctttccattctgactctccaatg 401
Query: 125 tctactaccctaactttgtgacagcgtcacaatggtgcctttctccctcacctccgcccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctactaccctaactttgtgacagcgtcacaatggtgcctttctccctcacctccgcccc 341
Query: 185 ttctccctaagtcatcctgaaactaacccctgcctggcagcgctcaatatcccattgtct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttctccctaagtcatcctgaaactaacccctgcctggcagcgctcaatatcccattgtct 281
Query: 245 gtcccttctccctgggagaatttaattacctgtagtcgaggtagatatggtttcttaagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtcccttctccctgggagaatttaattacctgtagtcgaggtagatatggtttcttaagt 221
Query: 305 tttcaatttccttttg 320
||||||||||||||||
Sbjct: 220 tttcaatttccttttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_m21.g1 MSMg01no185_m21.g1 CHROMAT_FILE:
MSMg01no185_m21.g1 PHD_FILE: MSMg01no185_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:36 2005
(281 letters)
>mm_chr1_40571072_40571752
Length = 681
Score = 462 bits (239), Expect = e-135
Identities = 272/283 (96%), Gaps = 4/283 (1%)
Strand = Plus / Plus
Query: 1 actttaggagaccacagtggcagtaactttgggcttaactttaacgtctata-tcaagat 59
|||| ||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||
Sbjct: 201 acttcaggagaccacactggcagtaactttgggcttaactttaaggtctatattc-agat 259
Query: 60 ctctgaggtttgataaggacactcccaacgcccaggcactctgaatgtacctcagcctga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctctgaggtttgataaggacactcccaacgcccaggcactctgaatgtacctcagcctga 319
Query: 120 attaaaccactatcatgaacaatgcctggtctgtccatttccccttcatcctcagtattc 179
||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 320 attaaaccattatcatgaacaatgcctggtctatccgtttccccttcatcctcagtattc 379
Query: 180 ctcctttaatcccatttagattttggattacctgg-ctgtccctgccacaccctgggagt 238
||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 380 ctcctttaatcccatttagattttggattac-tgggctgtccctgtcacaccctgggagt 438
Query: 239 ctaagctcatgtgccctcatgtgctttcctctgaacctgcaat 281
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctaagctcatgtgccctcatgtgctttcctctgaacctgcaat 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
