BAC Information

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BAC

Clone NameMSMg01-185P20
Chromosome1 (Build37)
Map Location 35,045,000 - 35,045,307
singlet/doubletsinglet
Overlap genenone
Upstream geneDst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
Downstream geneLOC100041544, LOC666283, LOC100041091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185P20.T7 (MSMg01no185_p20.b1)MSMg01-185P20.TJ (MSMg01no185_p20.g1)
ACCAG377812AG377813
length786763
length of high quality
(start - end)		317 (58 - 374)249 (78 - 326)
definitionCHROMAT_FILE: MSMg01no185_p20.b1 PHD_FILE: MSMg01no185_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:50 2005CHROMAT_FILE: MSMg01no185_p20.g1 PHD_FILE: MSMg01no185_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCAAGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGTAATCATTTTATAACATACTTATTCCTTTTTACAATTT
ATTGAGTATTTAACTCTTGTTTGCAGACCGGCTCAAGTAGCGGGTCTGCC
CTTTTTGGAGTAAAACTAAAAATAAGAAATAAACCGTAATAACAAGTGTA
ATGATTAGACCCGGCAGGGTAGAAGGCAACCAACATCTCAGTGGCTGTGC
ATCAGCTGGAGTTCTGAGCAGGGGCTGGGGAGCTGGGGAGGCTGCTGAAC
CTGATGGAACCTGTGAGGGGCGCTGTGGGCATTTAGATGATCTGACTGGA
TGTGCTTGTGTGAACAACTTACATCTGTTTTGTACCCCCCCCCCCATACT
GAGCTATGTCATTGCTGCTTCTGCAATTCCCCCTCCCAAACTCAAGAGAA
CTCCGTGAAGTCCAGTGAATCTTCTGATTTCTGGACCAGGTAAAGAGCAG
AAGCATGGTAGTGTATTCCAGGTGTTATAGCTGGCACGGCGTATGCCTAT
GCACTGTCTGCCTCTCTGCTATGTCTTTGTTACTGTACGTTATTTCTTTG
CATCTCGCTATCTCCATTTCTCCCCCATACTACTTTCGATATTCTCTCCT
TCCTCTATTGTCAATCTTTTTATACACCATCTACTTATTTTTTCTCTTTT
CTTTTTCCTTTCCCCTCTGTATCTTTCTTTTACTCTTTCCAATACCCTCT
TTGTCTATCTTCATTTTTCATTCTTTTTTTTTCACG

TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATC
ATGAATGGGTGTTGGATCTTGTCAAACGCTTTTTCTGCATCTAACGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGA
TGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACT
TGGTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAG
AATTTTATTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGA
AGTTCTCTATCTTTGTTGTATTTCTTCGCGCCTCAGGTATCTGAGTATTA
GTGTCTTCATAAAATGTTTCCCCCCCCCCAAAAAAAAAAAATCATCTTGT
TGAATACTTTGCGCTCAACTGCTATTTTATCTTTTTCCCACGCCTTCATC
AATCCTGCTTTTTACTCTATATATGCCCGCTAATTTATTCCACTCCCGTT
AAACTTCTCTCTGACTTCGATCTCTTTTTATTACTTAAACTAAATTCTTA
TCTTTTTTATGTTATCTTATTTCCAATACATTTAGAACACATTATGTTTT
TTTTTTAAATATCCTAGCCCATTCATTCTTTTTTATTACTATTTCTTCAT
TTTTTTTTATTTATCATACGCTTGTTTATATTCTATGTCCTCTCTCATCC
TCCTAGTTTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_p20.b1 MSMg01no185_p20.b1 CHROMAT_FILE:
MSMg01no185_p20.b1 PHD_FILE: MSMg01no185_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:50 2005
         (317 letters)



>mm_chr1_35044792_35045507
          Length = 716

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcattttataacatacttattcctttttacaatttattgagtatttaactcttgtttgca 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcattttataacatacttattcctttttacaatttattgagtatttaactcttgtttgca 268

                                                                       
Query: 69  gaccggctcaagtagcgggtctgccctttttggagtaaaactaaaaataagaaataaacc 128
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaccggctcaagtagcgg-tctgccctttttggagtaaaactaaaaataagaaataaacc 327

                                                                       
Query: 129 gtaataacaagtgtaatgattagacccggcagggtagaaggcaaccaacatctcagtggc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtaataacaagtgtaatgattagacccggcagggtagaaggcaaccaacatctcagtggc 387

                                                                       
Query: 189 tgtgcatcagctggagttctgagcaggggctggggagctggggaggctgctgaacctgat 248
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtgcatcagctggagttctgaccaggggctggggagctggggaggctgctgaacctgat 447

                                                                       
Query: 249 ggaacctgtgaggggcgctgtgggcatttagatgatctgactggatgtgcttgtgtgaac 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggaacctgtgaggggcgctgtgggcatttagatgatctgactggatgtgcttgtgtgaac 507

                    
Query: 309 aacttacat 317
           |||||||||
Sbjct: 508 aacttacat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space:   217756
Effective search space used:   217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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