Query= MSMg01no186_d16.b1 MSMg01no186_d16.b1 CHROMAT_FILE:
MSMg01no186_d16.b1 PHD_FILE: MSMg01no186_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:09 2005
(320 letters)
>mm_chr1_29826810_29827529
Length = 720
Score = 596 bits (308), Expect = e-175
Identities = 314/316 (99%)
Strand = Plus / Plus
Query: 5 gaattcaataagatctaaatggggagcaaagacagcaggagataaggtctgagggaggag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataagatctaaatggggagcaaagacagcaggagataaggtctgagggaggag 264
Query: 65 aatcaagagaataatgtaattgaaaataactatcagggggttggtcctaatctgaagtgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatcaagagaataatgtaattgaaaataactatcagggggttggtcctaatctgaagtgt 324
Query: 125 aaacagacatattccagaagctgcctcagagccaacagtgaaggctaagcaaaagataaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacagacatattccagaagctgcctcagagccaacagtgaaggctaagcaaaagataaa 384
Query: 185 atgattcagaaatgtggtgtcaatcaactttgagtctaagttttcaggcctggaagttta 244
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgattaaaaaatgtggtgtcaatcaactttgagtctaagttttcaggcctggaagttta 444
Query: 245 taaaggtactggccatgtagaaaaaataattattaatctactgtatataacagtaagcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaaggtactggccatgtagaaaaaataattattaatctactgtatataacagtaagcaa 504
Query: 305 aagaacactttccagt 320
||||||||||||||||
Sbjct: 505 aagaacactttccagt 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_d16.g1 MSMg01no186_d16.g1 CHROMAT_FILE:
MSMg01no186_d16.g1 PHD_FILE: MSMg01no186_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:09 2005
(649 letters)
>mm_chr1_29925102_29926150
Length = 1049
Score = 1208 bits (625), Expect = 0.0
Identities = 645/655 (98%), Gaps = 7/655 (1%)
Strand = Plus / Minus
Query: 1 attgtaaatttgtagcacccccagtagtaagaatactggagtagacaccagtattaagct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 attgttaatttgtagcacccccagtagtaagaatactggagtagacaccagtattaagct 889
Query: 61 acatagttaaagcagtttatgttggcttaaattccaaacgtccaaccacatatttttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 acatagttaaagcagtttatgttggcttaaattccaaacgtccaaccacatatttttgag 829
Query: 121 caccatcaggaaaggagacaggaagaaagaagatttcacaatagaaatcacacattaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 caccatcaggaaaggagacaggaagaaagaagatttcacaatagaaatcacacattaaga 769
Query: 181 gtattccacaatgactttagaaaaaccaaccaaccaaccaaccaattacattaaaaaccg 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 768 gtattccacaatgactttagaaaaa-caaccaaccaaccaaccaattacattaaaaaccg 710
Query: 241 aaaactcaggaaactttcttcctgctgaaatgtttaatactttcgtgagataagtaggga 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 709 aaaactcaggaaactttcttcctgctgaaatgtttaatacttttgtgagataagtaggga 650
Query: 301 gacctagataaaaagtaaataactacaagcccaggagttgcacaaaatgcagtgatttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gacctagataaaaagtaaataactacaagcccaggagttgcacaaaatgcagtgatttac 590
Query: 361 taaatattttaagaaaaatggatgatcatacatttgagaaagtaatgcattttgggaaga 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 taaatattttaagaaaaatggatgatcatacatttgagaaaataatgcattttgggaaga 530
Query: 421 gctcctgggtacagcctatgtcagataccagtgactactttaaataacaaccaggaaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gctcctgggtacagcctatgtcagataccagtgactactttaaataacaaccaggaaggg 470
Query: 481 aactgagaaatggatctgaatgggacagagtgaagtggag------gtatcaagggcctt 534
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 469 aactgagaaatggatctgaatgggacagagtgaagtggaggtattagtatcaagggcctt 410
Query: 535 ctgctctcttttattattattaatatttttatgaaatgcttccaataagatacaatgatg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctgctctcttttattattattaatatttttatgaaatgcttccaataagatacaatgatg 350
Query: 595 cctacaaacccatacctgaaaacaaactgcaggatatttgacagccccagcaata 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cctacaaacccatacctgaaaacaaactgcaggatatttgacagccccagcaata 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
