BAC Information

Click to search

BAC

Clone NameMSMg01-186N13
Chromosome1 (Build37)
Map Location 142,630,209 - 142,630,519
singlet/doubletsinglet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186N13.T7 (MSMg01no186_n13.b1)MSMg01-186N13.TJ (MSMg01no186_n13.g1)
ACCAG378399AG378400
length743864
length of high quality
(start - end)
315 (46 - 360)42 (78 - 119)
definitionCHROMAT_FILE: MSMg01no186_n13.b1 PHD_FILE: MSMg01no186_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:58 2005CHROMAT_FILE: MSMg01no186_n13.g1 PHD_FILE: MSMg01no186_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTTAATCATGTTTAGGTAACAGAGTTTAGGAAATAATGTCCTT
AATGAGACATTTGCTATGAGGTTTCAGAAATGGGTAGAATAGTGCTAGAT
GAACTAGGATCACCTTGACCAAGCACAGTTTATGAGGCACACAGGTTAAT
GTGTGGAAGAAATATGCTAATTATATAAAATGTGAGCTGCTTTACCAGTA
CTGTAGAAATTGGAAGGACAGACTTAAAGATTTCAGATTCAAAAGGACCA
CCACGCTATTGGTGATTCTATGGAGTGACAGTAACAAGTTGAATTTTAGA
AAGATAGCTATTTATGTAAAAACGCACCACCTATCTGAAATTTGACAAAA
GACTGAGTCTGAGATGCCTCTATTAGTCAAAATGGTGCTACTGAGGTCAA
CTAGGCTACTGAAAATGGTATGTAGCTGAGAGATTACAGAAATAGTTCTC
AGGTATTGTTTGAGTTATTTTCTTTAAAGGTTTTATTTTTATTTGCATTC
ATGTATGCGTGTGTGTGCACCCATTGAGTGTCTACTGTGCCTGTTCTTTT
GATTGTGGTTTATCTTTTTCATCTTTTCTTCTTATCGTTCTTTTATCTTT
TTTATTTTCTCTTATTTTCTCTTTCTTATCTTTATCCCTCCTCCTGTTCT
TTTATACCTACTATTCTCTTCCTCCCTACTTTTCTTTTCTCTC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAGGAAGAGGGAGTGGG
TGGGTTGGTGAGTAGNNNTTTNNCNTNNNTNNNNNCTTTTTTATATTTTT
TTTCTTTTTTCTTCTCTCTTTTCTTTCCCCCCCCCACCCTTTTTCCTCCT
TTTCTTTCTTCTTTTCTCTCTCTTCTATTTTTCTCTTCTTCTTTTTCTCT
ATTTCTTTACTTTACCTATCACCACTCCCTTATATCCTTACACTCTTCCT
TTATTACTCTTCATTCCATTCACAATCAATAACATGAAATTTTTTTTGTA
AAACCACCAAATTAAAATAAATAAAAAAAAAATTTTTTTATAATTTTCCC
CAAAACATATCCCCCAAAGTATTTTATATATAATAATTTATTACTAGGCT
TTTGCCCCCCCCAAAAAAAAAAAAAAAAATAATCTGTGGGGGAGGAGGTC
TTTTTTTATTTCATATTATGCTATTTCCTACATTACTCACCTAAACACAA
CGATCTTTATTTTCTCAAATTCGCCATATATACGATTAGAATAAATACTT
TATTTTGTAATGATATATCTTATAAACACTAAACAAAAACAGTCACATCC
TCATCATTATATTAATATTGACGCAATTTATATTCTTTTCGTTATATGCA
ACTACTACGTCTATACTTATTTTTTATTACCATACACCTCAACGATCGCC
TATAGTAAATAATAATTTAATACACATTCCGCCGTTGCACTGGCTGCTCC
TTATGCTAATCATTATAACCATTTCTCTTTCCTCTCTCCATCTTTTTGTC
TCCCCTCCTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_n13.b1 MSMg01no186_n13.b1 CHROMAT_FILE:
MSMg01no186_n13.b1 PHD_FILE: MSMg01no186_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:58 2005
         (315 letters)



>mm_chr1_142630005_142630719
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcttaatcatgtttaggtaacagagtttaggaaataatgtccttaatgagaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcttaatcatgtttaggtaacagagtttaggaaataatgtccttaatgagaca 264

                                                                       
Query: 65  tttgctatgaggtttcagaaatgggtagaatagtgctagatgaactaggatcaccttgac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgctatgaggtttcagaaatgggtagaatagtgctagatgaactaggatcaccttgac 324

                                                                       
Query: 125 caagcacagtttatgaggcacacaggttaatgtgtggaagaaatatgctaattatataaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caagcacagtttatgaggcacacaggttaatgtgtggaagaaatatgctaattatataaa 384

                                                                       
Query: 185 atgtgagctgctttaccagtactgtagaaattggaaggacagacttaaagatttcagatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtgagctgctttaccagtactgtagaaattggaaggacagacttaaagatttcagatt 444

                                                                       
Query: 245 caaaaggaccaccacgctattggtgattctatggagtgacagtaacaagttgaattttag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 caaaaggaccaccacgctattggtgattctatggagtgacagtaacaagttgaatttcag 504

                      
Query: 305 aaagatagcta 315
           |||||||||||
Sbjct: 505 aaagatagcta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)