Query= MSMg01no186_o16.b1 MSMg01no186_o16.b1 CHROMAT_FILE:
MSMg01no186_o16.b1 PHD_FILE: MSMg01no186_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:03 2005
(317 letters)
>mm_chr1_121963910_121964626
Length = 717
Score = 594 bits (307), Expect = e-174
Identities = 310/311 (99%)
Strand = Plus / Minus
Query: 5 gaattcactgcctccttcctcttcttcctcaatgccgccagcggccttcacatcaacagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcactgcctccttcctcttcttcctcaatgccgccagcggccttcacatcaacagc 456
Query: 65 ctcactcagccctgggaccctccagcagggaccctggcttacagaaagcgaggttatgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctcactcagccctgggaccctccagcagggaccctggcttacagaaagcgaggttatgat 396
Query: 125 gggacttctctgatataggacctctggctgagattgaataggacaaccaatgaccttgac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gggacttctctgatataggacctctggctgagattgaataggacaaccaatgaccttgac 336
Query: 185 actgcctcttaggcacttagctctagcaatgccctgggagtctcttcagctgagctccag 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 335 actgcctcttaggcacttagctctagcaatgccctggaagtctcttcagctgagctccag 276
Query: 245 ggcaaaggcagaagggtgcctctgtacgacggcacagtgagctggataggttagtcatgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcaaaggcagaagggtgcctctgtacgacggcacagtgagctggataggttagtcatgc 216
Query: 305 tattaaaatct 315
|||||||||||
Sbjct: 215 tattaaaatct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_o16.g1 MSMg01no186_o16.g1 CHROMAT_FILE:
MSMg01no186_o16.g1 PHD_FILE: MSMg01no186_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:04 2005
(287 letters)
>mm_chr1_121808402_121809082
Length = 681
Score = 489 bits (253), Expect = e-143
Identities = 277/287 (96%), Gaps = 6/287 (2%)
Strand = Plus / Plus
Query: 1 actggattcagtcagtctaagaaaaaaaaaaattcatacttacttgagagcccataccac 60
||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct: 201 actggattcagtcagtctaagaaaaaaaaaa--tcatactt-c---agagcccataccac 254
Query: 61 aacagtttatttccggctgtgaaaagggatgcagctggacaggtttattggccaaaacca 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aacagtttatttccagctgtgaaaagggatgcagctggacaggtttattggccaaaacca 314
Query: 121 caagtggcagtgtcacatgctgactagtgtccctacttccaccaagctcccatggttgag 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 315 caagtggcagtgtcacatgctgcctagtgtccctacttccaccaagctcccatggttgag 374
Query: 181 ccacatttccattatcttacgaggtggctgtatttggagcttcggtctatcattgaaata 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 375 ccacatttccattatcttacgaggtggctgtatttggagcttcggcctatcattgaaata 434
Query: 241 gaaacggaaggttcgtgggatggcaatactcagatctcactgctttc 287
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 435 gaaacggaaggttcgtgggatagcaatactcagatctcactgctttc 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 681
Length adjustment: 9
Effective length of query: 278
Effective length of database: 672
Effective search space: 186816
Effective search space used: 186816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
