BAC Information

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BAC

Clone NameMSMg01-186P21
Chromosome1 (Build37)
Map Location 144,156,766 - 144,157,159
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186P21.T7 (MSMg01no186_p21.b1)MSMg01-186P21.TJ (MSMg01no186_p21.g1)
ACCAG378500AG378501
length771833
length of high quality
(start - end)
400 (46 - 445)204 (78 - 281)
definitionCHROMAT_FILE: MSMg01no186_p21.b1 PHD_FILE: MSMg01no186_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:09 2005CHROMAT_FILE: MSMg01no186_p21.g1 PHD_FILE: MSMg01no186_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAATGAAAATAAAAGTTATTACATTTATTCTCTGCATGGGAACAA
AGAATGGTTACAATAAGGAACAGCAGTAATCACTTTGGTCACATTTGAAG
CATAGCAAAAGTCATGAGAAATAAAGAAGTGGGTCCCTTTTCACCTAAAT
AATGGAAGAGAGCAGATATGAGTACTTTTTTATGAATGAAGTCCTCAAAA
GATGTCTATGGTTACTGCTAACATAGAGGGCACACAAGCCTGAAATCAGG
TAACTGAAGAATGAACACAAAAGTACTTGGCAGCTTCTGATCTTTGGCCC
TGCCTGCACTGCAGACAAAATCTAGACTACAGGAGCACAGTAGGAAACTA
GCAACCTATTTTTTCATGTAGCAAGTAGTGAGGGTGAAGAAGTTNGGNNT
TNCNNNNNNNNNNNNNNNTNNTTTTTTTTNNTTNNAATTTTTTTTTTTTT
TTTTTTTTACTTCTTTCTTCTCTTCTTCTCCTTCTCCTCCTCTTTTTCTT
TCCTTCTTTCTCTTTTTCTCTCCCCCCTCTTCTTTCTTTTTTCTTCCTTC
CCTTCCCCTTTTTTTTTCTCATCTCTTTTTTTCTCTTTCCTCTTCTTTTT
TCTTTCCTTCCCCTATTCTCTTTTTCCTTCACTCTTTCTCCTTTCCCTCT
TTTTTTTCCTTCCTTTTCTCTTTTTNTTCCCCTTTTTTTTTCTTCCTTCC
CCTCTTTTTATCCCTCCCCCC
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCA
TCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGG
TGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTG
GTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGC
AATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGCTAACAGACTGTTCCTC
TGTTGATTTTGTTTACCTCTATCTTTTTTTTTTTTTCCCCAGGCCACTTA
AACCGGAGAAACTATTTTTTTTTTTTCCCCCCCCCCCCCCCCCTAGAAAA
GGATAAGGAAAAGAAATGTTGTTTNNTCCCCCCCTTTTAAAAAAAAAAAA
AACATTGTTGGGGGGGGGGGGGCTATTTTCTTTTTTGTCCGTTCACCTCC
CTCCGTTCTCCTTTCTTTCCCCCCTTATTCTCACCTTCTATTTCCAAAAT
GCTCTTTTATAATCTCTTTTTTTATATCTTTTCTTTTTTCTTCCTCCTTC
TTTTCTTGACTCCTATTTCTCCCTCTATTTTTTTGTTTTCCCCGCCTTTC
TTTCTTGTCGCTCTTTTATCTCATCCTTACTATATCCTTCTTCTGAGTAT
CTCACAGTTCCCATTACCCTTACTTTTTCCGTTTTATTCTTGTTTCCATT
TTCTTGCCTTCCTCACTTCTTACATCTATTATCATTTTCTCCTTCTTCAC
CCCTCTCCTTCCTTTTAGTTTTCACATCTCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_p21.b1 MSMg01no186_p21.b1 CHROMAT_FILE:
MSMg01no186_p21.b1 PHD_FILE: MSMg01no186_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:09 2005
         (400 letters)



>mm_chr1_144156562_144157360
          Length = 799

 Score =  688 bits (356), Expect = 0.0
 Identities = 386/396 (97%), Gaps = 3/396 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaatgaaaataaaagttattacatttattctctgcatgggaacaaagaatggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaatgaaaataaaagttattacatttattctctgcatgggaacaaagaatggtt 264

                                                                       
Query: 65  acaataaggaacagcagtaatcactttggtcacatttgaagcatagcaaaagtcatgaga 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaataaggaacagcagtaatcattttggtcacatttgaagcatagcaaaagtcatgaga 324

                                                                       
Query: 125 aataaagaagtgggtcccttttcacctaaataatggaagagagcagatatgagtactttt 184
           |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct: 325 aataaagaagtgggtcccttttcacctaaatagtggaagagagcacatatgagtac-ttt 383

                                                                       
Query: 185 ttatgaatgaagtcctcaaaaga-tgtctatggttactgctaacatagagggcacacaag 243
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttatgaatgaagtcctcaaaa-actgtctatggttactgctaacatagagggcacacaag 442

                                                                       
Query: 244 cctgaaatcaggtaactgaagaatgaacacaaaagtacttggcagcttctgatctttggc 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 443 cctgaaatcaggtaactgaagaatgaacacaaaagcacttggcagcttctgatctttggc 502

                                                                       
Query: 304 cctgcctgcactgcagacaaaatctagactacaggagcacagtaggaaactagcaaccta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctgcctgcactgcagacaaaatctagactacaggagcacagtaggaaactagcaaccta 562

                                               
Query: 364 ttttttcatgtagcaagtagtgagggtgaagaagtt 399
           |||| |||||||| ||||||||||| ||||||||||
Sbjct: 563 ttttctcatgtagtaagtagtgaggatgaagaagtt 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 799
Length adjustment: 9
Effective length of query: 391
Effective length of database: 790
Effective search space:   308890
Effective search space used:   308890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)