BAC Information

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BAC

Clone NameMSMg01-187B21
Chromosome1 (Build37)
Map Location 82,829,015 - 82,829,304
singlet/doubletsinglet
Overlap genenone
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491
Downstream geneHrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187B21.T7 (MSMg01no187_b21.b1)MSMg01-187B21.TJ (MSMg01no187_b21.g1)
ACCAG378582AG378583
length778727
length of high quality
(start - end)
191 (46 - 236)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no187_b21.b1 PHD_FILE: MSMg01no187_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:20 2005CHROMAT_FILE: MSMg01no187_b21.g1 PHD_FILE: MSMg01no187_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGTCTCCTGCGTGAGATATGTTTTAACCCAGAGCTCCTCCATT
AAACTACCTCGTGTATTTACATCACGCATGGTCTTTTCGTGATTCTTTGG
GTGCAGGCCGAATCGGGAATTGAGTGGGGGGTTTCCCCACTAGGTTCTTT
CAGAATACACACAGGAAGCATGTTTCTCTGTATAGTCCTGGCTGTCCCGT
TTTGCATATTAATTTGGTCACACACTCATACAACAGAATGCCCCTCGACA
CTGTCACGTCTTTTCTCCACGAGTCTTATTCTCTTACCCTGGCCACTCCC
TCACCCCCCTTCCTCTTTTTTTTTTTTTCCCCCCCCCCTTTTCTATATTA
ATATTTTAAATTCATTTAAAGTTACCCCCCCATCTCTAAAAAAAAAAATA
TANCCTGTTATCGTCCGTTTTTTTTCCCCCATCCCACTCTTTATTTTCTT
CCATCCTTTCCCCCCTTTTTTCCACCCTTTTTCCCCCCTTTCCTTCCCCC
CTCTTTCCTTCCTTTCCCTCCACCTTCCCCACACTATTTCCTCCCCTTTC
TTTTTTCCCCCCTCCCCCACCTTTCCCCCCTTTCCCCCCCTTTCCTTTTT
CCCCCCCCACTTTTCTATTCTTTCCCCCTTTCCCTCCCCACCCCTCTTTC
CCCCACCCCTCACAACTCATTTTATTCCACTCTCCCTTTCCCATTTTTCC
CTTTTTTCCACTTTTCACCTCTTTCTTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTAGAAGCCACAAAGCAGGTCT
TCACCAGCAGGGACAGCCAGCGCTTACCGTGCAGGCATCACGGGAAGACA
GATACCCATGACATGGAGGCAGCAGCCAGGTGATTACCTGTAAGCTTTGG
TGGTGAGGAGCTCACATCTTTTGGGTGTCTGGTTTTGACACCCTGGGTGC
CGTCTGTACAATACTCAGAAAGCACCCTATTTCCAGGAAGTGCACACTGA
CTGCTGGTTCTTAGTCATTTCTCCCCCACCCGCCTTTATAGCTCACTGCT
TTTTTGAAAATTGAAAAAGTATGTCACACCGCAATGCTAAAAAAAAAAAA
ATTAGCAAACCGCAGCTGACCCCCGGTACTATTGGAAGAAGAGGAAGGGA
AAATATCACGTTGACTGTTTCTACGGTGTTTTGTGCTTGGGCGAGCACCC
ACCACGTGAAACCTGTGGGGTCCTGGAGGCGTTTGTGTAGCCAACACTGA
CATTTCCTTTGCATGACTTACACGGGCCACAAAAATGAGTATTGACTCCT
TGGCCATAAGCTGGAAAAGGTCATGCCACAGGCAGGGAAGAAGGTTCATC
AAATGGAAAACACTCATGCAACCCCTGGCTCCCCTAACCTCCGGAATCTT
CTTGATGACAGTAATCCCCTGCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_b21.g1 MSMg01no187_b21.g1 CHROMAT_FILE:
MSMg01no187_b21.g1 PHD_FILE: MSMg01no187_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:20 2005
         (290 letters)



>mm_chr1_82828815_82829504
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtagaagccacaaagcaggtcttcaccagcagggacagccagcgcttaccgtgcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 aagtagaagccacaaagcaggtcttcaccagcagggacagccagcgcttagtgtgcaggc 260

                                                                       
Query: 61  atcacgggaagacagatacccatgacatggaggcagcagccaggtgattacctgtaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcacgggaagacagatacccatgacatggaggcagcagccaggtgattacctgtaagct 320

                                                                       
Query: 121 ttggtggtgaggagctcacatcttttgggtgtctggttttgacaccctgggtgccgtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtggtgaggagctcacatcttttgggtgtctggttttgacaccctgggtgccgtctg 380

                                                                       
Query: 181 tacaatactcagaaagcaccctatttccaggaagtgcacactgactgctggttcttagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaatactcagaaagcaccctatttccaggaagtgcacactgactgctggttcttagtc 440

                                                             
Query: 241 atttctcccccacccgcctttatagctcactgcttttttgaaaattgaaa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttctcccccacccgcctttatagctcactgcttttttgaaaattgaaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)