Query= MSMg01no187_n18.b1 MSMg01no187_n18.b1 CHROMAT_FILE:
MSMg01no187_n18.b1 PHD_FILE: MSMg01no187_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:18 2005
(318 letters)
>mm_chr1_131605476_131606193
Length = 718
Score = 433 bits (224), Expect = e-126
Identities = 275/314 (87%), Gaps = 36/314 (11%)
Strand = Plus / Minus
Query: 5 gaattcctagtgtctatttctctccactttcttctctctgtccttcctactgtctcttat 64
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 396 gaattcctagtgtctatttctctccactttcttctctctgtccctcctactgtctcttat 337
Query: 65 acataaagccataggggtgtggcttcaaaatactaggccactgtattttccaacctatac 124
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 336 acataaagtcataggggtgtggcttcaaaatactaggcctctgtattttccaacctatac 277
Query: 125 tgaagcatatcaataaccctagactcagaatatactctgaaaagagccatacatgtccat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgaagcatatcaataaccctagactcagaatatactctgaaaagagccatacatgtccat 217
Query: 185 tgccaaaagagtatgcacacacacacacacacacacacaccatacatgcatgcatacata 244
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 216 tgccaaaagagtatg------------cacacacacacaccatacatgcatgcataca-- 171
Query: 245 catacatacttacatacatacatacttacatacatacatacatacactgctaggatattg 304
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 170 ----------tacatacatacatact------------tacatacactgctaggatattg 133
Query: 305 aaaaacatatcaag 318
||||||||||||||
Sbjct: 132 aaaaacatatcaag 119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_n18.g1 MSMg01no187_n18.g1 CHROMAT_FILE:
MSMg01no187_n18.g1 PHD_FILE: MSMg01no187_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:18 2005
(630 letters)
>mm_chr1_131510973_131512002
Length = 1030
Score = 1141 bits (590), Expect = 0.0
Identities = 620/630 (98%)
Strand = Plus / Plus
Query: 1 atgcaggggagtatcattacccatagaagccagagagggcattggatcctttggaggtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcaggggagtatcattacccatagaagccagagagggcattggatcctttggaggtct 260
Query: 61 tatttcaggtggttgtgagctgtctgatgtaagttctgggaactggactcaggtcctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttcaggtggttgtgagctgtctgatgtaagttctgggaactggactcaggtcctctg 320
Query: 121 caagaacagtacattaataagcactgagccatctctacagctccagactccttagatttt 180
||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 caaaaacagtacactcataagcactgagccatctctacagctccagactccttagattct 380
Query: 181 tatttccctacacttcaggagcacagcagcatgcactgcacgatcccttacatattaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttccctacacttcaggagcacagcagcatgcactgcacgatcccttacatattaacc 440
Query: 241 acatagaactcagtgcatgttgtccattttacagccacctctcataacactgattcacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatagaactcagtgcatgttgtccattttacagccacctctcataacactgattcacag 500
Query: 301 agaatgattggcttgcagatgatataactaggatctctttctatttcagggctggatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaatgattggcttgcagatgatataactaggatctctttctatttcagggctggatata 560
Query: 361 catgtaatcagactttatgtccatcatttatttgctgtggcatctaaaagaagctactca 420
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 catgcaatcagactttatgtccatcatttatttgctgtggcatctaaaagaagctactta 620
Query: 421 tcttctctaggtcacgacttttgatactggaattgttaattgtatcatttagactatcgg 480
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttctctaggtcatgccttttgatactggaattgttaattgtatcatttagactatcgg 680
Query: 481 actgaaacagagactgagtgtgaaaaataccaggccagtgcttaggacataaagacagta 540
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 actgaaacagagactgggtgtgaaaaataccaagccagtgcttaggacataaagacagta 740
Query: 541 cagaagggaaggtcttgtctttctcttttaggtataattctattcctttcataaaaagaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagaagggaaggtcttgtctttctcttttaggtataattctattcctttcataaaaagaa 800
Query: 601 tgttcttgttccttatatgacatatcatag 630
||||||||||||||||||||||||||||||
Sbjct: 801 tgttcttgttccttatatgacatatcatag 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
