BAC Information

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BAC

Clone NameMSMg01-188C07
Chromosome1 (Build37)
Map Location 44,198,663 - 44,198,972
singlet/doubletsinglet
Overlap geneBivm
Upstream geneFhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1
Downstream geneErcc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188C07.T7 (MSMg01no188_c07.b1)MSMg01-188C07.TJ (MSMg01no188_c07.g1)
ACCAG379257AG379258
length760806
length of high quality
(start - end)
318 (57 - 374)181 (227 - 407)
definitionCHROMAT_FILE: MSMg01no188_c07.b1 PHD_FILE: MSMg01no188_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:41 2005CHROMAT_FILE: MSMg01no188_c07.g1 PHD_FILE: MSMg01no188_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCCATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTAGATATCCGACATCTAGAGAGGGGGCTGCAGT
TCCGGAAAACAAAGAAGGTAAGAATACTACTACATTAGAAGTAACTTGTC
GAATGACCAGATTGCAATATTTTATTAACAATCTTGTCTTGGTAAATAAC
AGAAACCAAGTTCAAACTACCTTAGTCAGGAAAGTAAGATTATTTTAAGG
ATTCAGGCTAACTTTAAGCTTCCAGCTAAGGATAGTCATAAGGAAATGAC
ACCCAGCACTGCAGTAATGGTAGAATGGCTTATGCAGGCTGTGCTGTACT
AAGTGCTTTATCTGAATGTATATTTCTTGTACCCCCACCCCCAACTTTTT
ATTCTCAGGTGTAGATTGAGACTTAACATGCCTTGGTTGAACTCCATAGT
CTTGGCCTAAGTTGGGTAAATTATGGTCACAAGACAGAGCCAGGTGTTCA
AGCATGACTACAGAAAGAAGCTTTCAGAAACAGATATAGTATAGATTGAG
TATGCAACCTTTTGCTATAAATGAAGCTGGGAGTGCCAGCGCATGCTTGT
AATCTCAGCTCTTAGGCGAGAGGATTTTCATGCTATCTTAAACTATTGAG
ACTATTATCTCCAAAGCCTTGTGTTATCTTACACACATATACACACATAC
ACTCACACACTCACATACATATAAATGCTGAGGGAATAAGATAGGAATTT
TAGTATAATG
NCCCGCTCCTTTTTTTCCNNNATTNNGCGNNCTTACTTCCTNNTCATCTA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGAGAAGGTTATCTATTCAGTAACA
TTCAAAATTACTTCTAGTAGAGACAGTGAAACTAATTAGGCATTACAAAG
AACAGAGCTGAAATAGTCTGCAGAGTGTTTACTTGGGACAATAGCCAGTC
TTACCCAGATAAGGGAATTCATAATGGCCTAGCGAATAGGTGGGTTTACC
ATGAAAGATTTATGGAATCCCCCTGAGACAGGTTTCTTCACTAGGCCCAA
AGAAACAGCATAAACCAGGCATTTACTAAGAACCCCTGGGGGGGGGTTAA
ACAATAGATTATTATTTCACCCCCCCCCCCTTCTTAGTGGCAGCGGCCTG
GCCCCTGCCTCCTTTTGATGTAAACATAACAAAATGTTTTATGTCCCGGT
AACTTGGTGGATGTACCTCGCCAAGTTCCTAGTTTCCCGTTATTCTTCTG
TATTCCCCAGTACTCCAGAGGCTGAGGCAGGTGGATTTCTGAGTTCTAGA
CCAGCCGGGCCCACACAGTGAGTTCCAGGACCGCCAGGGCCTATACAGAG
AAACCCTGTCTTGAAAACCAACAGAACACCACACAGTTTGATGCTTCGAT
TTGATCAATTACTTCCCGATTCTTACCTATCCCCTGGGGTCGCCACCTGT
CTGCCATTTCCCTCTACTGACCCCCCGGCCCCCCTGCCAACCAGAACACC
TGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_c07.b1 MSMg01no188_c07.b1 CHROMAT_FILE:
MSMg01no188_c07.b1 PHD_FILE: MSMg01no188_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:41 2005
         (318 letters)



>mm_chr1_44198459_44199176
          Length = 718

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagatatccgacatctagagagggggctgcagttccggaaaacaaagaaggta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagatatccgacatctagagagggggctgcagttccggaaaacaaagaaggta 264

                                                                       
Query: 65  agaatactactacattagaagtaacttgtcgaatgaccagattgcaatattttattaaca 124
           ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 agaatactattacattggaagtaacttgtcgaatgaccagattgcaatattttattaata 324

                                                                       
Query: 125 atcttgtcttggtaaataacagaaaccaagttcaaactaccttagtcaggaaagtaagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcttgtcttggtaaataacagaaaccaagttcaaactaccttagtcaggaaagtaagat 384

                                                                       
Query: 185 tattttaaggattcaggctaactttaagcttccagctaaggatagtcataaggaaatgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattttaaggattcaggctaactttaagcttccagctaaggatagtcataaggaaatgac 444

                                                                       
Query: 245 acccagcactgcagtaatggtagaatggcttatgcaggctgtgctgtactaagtgcttta 304
           || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 acacagcactgcagtaatggtagaatggcttatgtaggctgtgctgtactaagtgcttta 504

                     
Query: 305 tctgaatgta 314
           ||||||||||
Sbjct: 505 tctgaatgta 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)