BAC Information

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BAC

Clone NameMSMg01-188C20
Chromosome1 (Build37)
Map Location 11,236,681 - 11,236,976
singlet/doubletsinglet
Overlap genenone
Upstream geneCpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik, LOC665262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188C20.T7 (MSMg01no188_c20.b1)MSMg01-188C20.TJ (MSMg01no188_c20.g1)
ACCAG379281AG379282
length758740
length of high quality
(start - end)
321 (65 - 385)293 (71 - 363)
definitionCHROMAT_FILE: MSMg01no188_c20.b1 PHD_FILE: MSMg01no188_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:44 2005CHROMAT_FILE: MSMg01no188_c20.g1 PHD_FILE: MSMg01no188_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAAATTNNNNNNTACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCAAGGCCCATACCTAAACATGATAAAA
GCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGACCCAAGCT
GGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTC
CCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAA
CAAAAGGAGATCAAGGGGATACAAATTGGAAAGGGGGAAGTCAAAATATC
ACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCA
CCAGAGAACTCCTAAACCTGATAAACAGCTTCTTTTGAAGTAGCCGCCAC
CATCAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAA
ACAGGCTCAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAA
ATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTG
TATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGATGATCTCAG
AAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATTGTNA
AAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATC
AAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAAATTGCAAATT
CATCTGGA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTACTGAATTTATTCCACTATCCAGTCTACT
TTGTTTTATATACAAAACATTTCAGACCACTTGAAGGGTACAGATGCTGA
CTCTGTTGGAGATCTCTCTCTTCAGAAAATTTATCAGCATAGTCAAGGTT
TATAAATTTCACATGAGATGAGAACACATAAAATTGTAGTGACAATTTGA
GAGCAGCATCTCTTTTTTTATTTCAAAAGTGCAGTAATTCCATGAAAGCT
TGGCACCATTGTTTTAGTGAGGAGGCAATGTAGCAACATGTATATTAATA
TGGCTATCTCGTTATTCTCACCTGCCCCGCCCTTTTTGCATTCAGACCAG
TTCAATTGCCCTTGAGAAGTTATATTTGAAACTAATATTTATTTTACTTA
CCTTAAAGGAATTCTTAATGTAATATTTTAGTAAGGAGAATATGGGAGAT
TAAAATTACTAGCCTATGGGGTTTCAGATTTTTGTAATAAATTCTGCATG
TGGTGATATTTATGAGGATAAATACTTCATAGTCTGACAAATAGAAGCAG
ATAAAAATCATGCTCATCTTCTAAGAGAATCATCTCTATCGAGGCGCTAA
GACACTCTCTTGTTTTCTATCTTGCACTAAGGAAAAGCTGCTGTCTTCCA
TCTCCCAACTAAGAAAAGACACTTTGTTTTTGCCAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_c20.g1 MSMg01no188_c20.g1 CHROMAT_FILE:
MSMg01no188_c20.g1 PHD_FILE: MSMg01no188_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:44 2005
         (293 letters)



>mm_chr1_11236481_11237179
          Length = 699

 Score =  503 bits (260), Expect = e-147
 Identities = 285/296 (96%), Gaps = 6/296 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgaatttattccactatccagtctactttgttttatatacaaaacatttcagaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tactgaatttattccactatccagtctactttgttttatatacaaaatatttcagaccac 260

                                                                       
Query: 61  ttgaagggtacagatgctgactctgttggagatctctctcttcagaaaatttatcagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagggtacagatgctgactctgttggagatctctctcttcagaaaatttatcagcat 320

                                                                       
Query: 121 agtcaaggtttataaatttcacatgagatgagaacacataaa----a--ttgtagtgaca 174
           ||||||||||||||||||||||||||||||||||||||||||    |  |||||||||||
Sbjct: 321 agtcaaggtttataaatttcacatgagatgagaacacataaagttgaagttgtagtgaca 380

                                                                       
Query: 175 atttgagagcagcatctctttttttatttcaaaagtgcagtaattccatgaaagcttggc 234
            |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 381 ttttgagagcagcatctctttttttatttgaaaagtgcagtaattctatgaaagcttggc 440

                                                                   
Query: 235 accattgttttagtgaggaggcaatgtagcaacatgtatattaatatggctatctc 290
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accattgttttactgaggaggcaatgtagcaacatgtatattaatatggctatctc 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 699
Length adjustment: 9
Effective length of query: 284
Effective length of database: 690
Effective search space:   195960
Effective search space used:   195960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)