BAC Information

Click to search

BAC

Clone NameMSMg01-188D17
Chromosome1 (Build37)
Map Location 159,816,912 - 159,938,862
singlet/doubletdoublet
Overlap genenone
Upstream geneRalgps2, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188D17.T7 (MSMg01no188_d17.b1)MSMg01-188D17.TJ (MSMg01no188_d17.g1)
ACCAG379315AG379316
length761742
length of high quality
(start - end)		369 (393 - 761)218 (77 - 294)
definitionCHROMAT_FILE: MSMg01no188_d17.b1 PHD_FILE: MSMg01no188_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:49 2005CHROMAT_FILE: MSMg01no188_d17.g1 PHD_FILE: MSMg01no188_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:49 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(159,816,912 - 159,817,280)(159,938,645 - 159,938,862)
sequence
NNTTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTGTTTCCATTATCTGCTATTGCATATGAGATACCA
CAGAAAGGGATTTAACAAACAATTCTTTCCTCGATTCCCCTGTCTATCTG
GGCTCAGCTAGGCAGCTCCTTTTACTCCATAGGATGATGGTGTTGATTGC
AGCATTAGCCAAAAGGTAGAAATGGCCTATGCTGAAGGACAGATGCCTGG
ATAAGTAACGTGGCACATGTAAGCAGTGAAATACTACTCTCATGAAAAGA
GTGAACCTAGACAAGGGAGAAGAAACTTGAAGGTATACAGATAATTATAA
GATAAAAGAAGTAGTATGTGTTTTTTATTATACCTGACCGAAATATCTAT
AATAGAAAAATTCACAGTACATAAGGTAGATTAGGAGTTTCTAGATGTTG
GTAGAGGTGAAAAATTATTATTTCATTACTGAATGAAAAATGTGGGTTCA
CCTGGATTCTCTGTGTCAAGTCCATCTCTTTCCTTTTGTTTTTAAATATA
ATGAAATGTTTTTAAAGCTGCATTTTGTCTTTCTTGAAAAAGAAAGCACA
TCCTCAAATCAGAAAATGGGATTGTTTTCTTCCCCCTTTGCTTCATTCTC
AGCTCCTATAAAGGTGATTTGAAGAGGCACTGGGACAAGCCACAAGAGGA
AGGGACAGTGACACAGAGAGGCTCTGCTTGCAAACACAGGGATATTTTGA
GCAGGGTCTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATAGGTCAGATCTAGCAGTAAT
AAACCTTATATTTGCCCACAATTCCTTAGCTAGAACTTGGTCCCGATACC
ACTCCCTGCTAGATGCCTAGGAGGGTAAGGGAGTAGGATGTTTCTGATCC
ATTACAGTCTCGGCCACATCCCATTTAGCTAGAACCAAGGGAGAGAAAAA
CAAAAGGTGGAAAAGTGTACGTCATAAGGCTGCTCTCTGGAGGACTGGTG
AAGAATGAAATGTATGACTAAAATTGAAAATCCAAATGAAGGACTTGCAT
AGCAAATCCATGGATTTTTTTTTGCCCCCCCCGCCACCTTGATTGGAAAA
GCTTCCAAGGGAGCTAGAAAAACAAAGCCTAGAATTTAGGGATGGATTCT
ACAAGGCAGGCCATGTATGAGTAAATGTCCCAGCTGGGAAATACAAACAA
GGAGTGGAGACAAAGCAAGTGATTGAGTGCACAGAGATCGTCAGGAAGCT
GACAGAGGGACACAAATCAGAGAAATGGAGTTAATCAACAGTTTTCTGAA
ACTCGGCTACAGATCCTTTCTTTATAAGACTATCCCACGTTATAGGACTT
TCAGCATACCTGATTGCCACCCATTATGGGCAGGCCTTGTTCCCAAGAAC
TAATTACAATGTGAGGACCCCACTTTCCAGATCTTTTGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_d17.b1 MSMg01no188_d17.b1 CHROMAT_FILE:
MSMg01no188_d17.b1 PHD_FILE: MSMg01no188_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:49 2005
         (369 letters)



>mm_chr1_159816712_159817480
          Length = 769

 Score =  698 bits (361), Expect = 0.0
 Identities = 367/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatctataatagaaaaattcacagtacataaggtagattaggagtttctagatgttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatctataatagaaaaattcacagtacataaggtagattaggagtttctagatgttggt 260

                                                                       
Query: 61  agaggtgaaaaattattatttcattactgaatgaaaaatgtgggttcacctggattctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggtgaaaaattattatttcattactgaatgaaaaatgtgggttcacctggattctct 320

                                                                       
Query: 121 gtgtcaagtccatctctttccttttgtttttaaatataatgaaatgtttttaaagctgca 180
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gtgtcaattccatctctttccttttgtttttaaatataataaaatgtttttaaagctgca 380

                                                                       
Query: 181 ttttgtctttcttgaaaaagaaagcacatcctcaaatcagaaaatgggattgttttcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgtctttcttgaaaaagaaagcacatcctcaaatcagaaaatgggattgttttcttc 440

                                                                       
Query: 241 cccctttgcttcattctcagctcctataaaggtgatttgaagaggcactgggacaagcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctttgcttcattctcagctcctataaaggtgatttgaagaggcactgggacaagcca 500

                                                                       
Query: 301 caagaggaagggacagtgacacagagaggctctgcttgcaaacacagggatattttgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagaggaagggacagtgacacagagaggctctgcttgcaaacacagggatattttgagc 560

                    
Query: 361 agggtcttt 369
           |||||||||
Sbjct: 561 agggtcttt 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no188_d17.g1 MSMg01no188_d17.g1 CHROMAT_FILE:
MSMg01no188_d17.g1 PHD_FILE: MSMg01no188_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:49 2005
         (218 letters)



>mm_chr1_159938445_159939062
          Length = 618

 Score =  422 bits (218), Expect = e-122
 Identities = 218/218 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccataggtcagatctagcagtaataaaccttatatttgcccacaattccttagctagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccataggtcagatctagcagtaataaaccttatatttgcccacaattccttagctagaac 359

                                                                       
Query: 61  ttggtcccgataccactccctgctagatgcctaggagggtaagggagtaggatgtttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttggtcccgataccactccctgctagatgcctaggagggtaagggagtaggatgtttctg 299

                                                                       
Query: 121 atccattacagtctcggccacatcccatttagctagaaccaagggagagaaaaacaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atccattacagtctcggccacatcccatttagctagaaccaagggagagaaaaacaaaag 239

                                                 
Query: 181 gtggaaaagtgtacgtcataaggctgctctctggagga 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtggaaaagtgtacgtcataaggctgctctctggagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |