BAC Information

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BAC

Clone NameMSMg01-188H07
Chromosome1 (Build37)
Map Location 149,878,748 - 149,879,037
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188H07.T7 (MSMg01no188_h07.b1)MSMg01-188H07.TJ (MSMg01no188_h07.g1)
ACCAG379471AG379472
length757759
length of high quality
(start - end)
315 (61 - 375)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no188_h07.b1 PHD_FILE: MSMg01no188_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:07 2005CHROMAT_FILE: MSMg01no188_h07.g1 PHD_FILE: MSMg01no188_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCTCCTTTTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCAAGATCTGGCTCAAGAGTCAGATCTGCAA
TTGTTCTCATAGGGAGGAGTCCCATAAAAAGTAATATCCTTTCAGCTATA
GTCTATATGCAGAGGACCTGGTTGCATACCCACGTAGGACCTGTGATTGC
AGGTTTAGTCTCTGTGAACTTATATGTACCTTGATTATTTGATTCAAAAG
ACCTTGATTTCCTAGTGTCCTTTATCCCTTCTGGCTTTTATAATTTATCT
GCCTTCTTTTCTGTAGGATACTCTGAGTTCTAAAGGGAAGGGTTTGATGG
AAACCTTCTATTGAGGCTTTTGTTCTTTATTTTGCCTCCCCCCCCACCTG
CTGCTGAAGAAAACCTCCCTGATAATTGCATAACTCATCCATGCATACTT
GTAACCAAATATCATTAAGCCAAATATTATATGTGTGTGTGTGTAAACAT
ATATATCCATATGTATATACACCTATATGTATATACATATATGTATGTAG
ATAGATAGATAGATAGATGCATATGTGCTCTACTTTTTACTTCCTTCGCT
TATCTTCCCATTCTTCCCTACCCTTTCCCCTTTCTCTTCCCTTTTTCTTC
CCCCTTTTAACTTTTATTCTCACCCCTCACTCTCACTCTACCTTTTTTTT
CCTCCCCTCCTTCTTCTTGCTCCTCTCTTCTCTCTCTTTAAACCTCACAT
CATATAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGGTGAATGATTCTTGCTTA
CTTCACTGTTCTAGAAGAGATTACTATATTCCAACAAATCAGGAGATGAT
TTCTTAAAAGATGACATTAAAGGACAGAAGGATGAGGAGATGAGCTGCTT
GTATTTGGGCAAGGGGAAGGGGTCACAGAGATCAGGATGTAAAGTGAATA
AATAAATTAATGGGGAAAAGGCAATATGTAGAAATAAAAAATAAAAGAAA
AAGAAAAACTTATAGAAGATAAAAAATATATATATAAAAGGTCAGATGTT
CCTCCAATGCCAGCAAATTTTTTAAGGCCCCCCACCTCTGCCCAGTCCCC
TTGAAGGTAAAAGAATACCAATAGGAGATGCCTGGCTAGATATAATCATT
TGGCTTGCAATATAAATATCATGCTTAGATATGAAATAAAGGTTAATTAA
TGCTTAGATAATGGGGTAAAGGTCAATTAGGGATGATAATGGAATGGGGA
AGAGGAAAAGAAGCCAATCGAGTAAATGGTAAGGATTCTGGGAAAACGGC
TAAGGAGAAATGAATTAAAAAGTTATGCTTGACTATTTTGGTATTTATTT
TGATTAATGATGGTTTTAGCTTATTCTGGGCCTATCTGATTGATAAACTA
AAAAGGTTGAAACTTCTTTATTCTTTGCTAACCTTTAACGTTTGTTTCTA
ACACCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_h07.g1 MSMg01no188_h07.g1 CHROMAT_FILE:
MSMg01no188_h07.g1 PHD_FILE: MSMg01no188_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:07 2005
         (293 letters)



>mm_chr1_149878548_149879240
          Length = 693

 Score =  503 bits (260), Expect = e-147
 Identities = 284/292 (97%), Gaps = 2/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaggtgaatgattcttgcttacttcactgttctagaagagattactatattccaaca 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 actaaggtgaatgattcttgcttacttcactgttctataagagattactatattccaaca 260

                                                                       
Query: 61  aatcaggagatgatttcttaaaagatgacattaaaggacagaaggatgaggagatgagct 120
           |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 261 aatcaggagatggtttcttaaaagatgacattaaaagacaggaggatgaggagatgagct 320

                                                                       
Query: 121 gcttgtatttgggcaaggggaaggggtcacagagatcaggatgtaaagtgaataaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgtatttgggcaaggggaaggggtcacagagatcaggatgtaaagtgaataaataaa 380

                                                                       
Query: 181 ttaatggggaaaaggcaatatgtagaaataaaaaataaaagaaaaagaaaaacttataga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttaatggggaaaaggcaatatgtagaaataaaaa-taaaagaaaaagaaaaacttataga 439

                                                               
Query: 241 agataaaaaatatatatataaaaggtcagatgttcctccaatgccagcaaat 292
           |||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 440 agataaaaaa-atatatataaaaggtcagacgttcctccaatgccagaaaat 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)