BAC Information

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BAC

Clone NameMSMg01-188J16
Chromosome1 (Build37)
Map Location 23,450,622 - 23,450,910
singlet/doubletsinglet
Overlap genenone
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1
Downstream geneLOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188J16.T7 (MSMg01no188_j16.b1)MSMg01-188J16.TJ (MSMg01no188_j16.g1)
ACCAG379576AG379577
length787744
length of high quality
(start - end)		320 (46 - 365)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no188_j16.b1 PHD_FILE: MSMg01no188_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:18 2005CHROMAT_FILE: MSMg01no188_j16.g1 PHD_FILE: MSMg01no188_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAAACTGTTTCCAAATATTTGCTCTGGTGCTGGATTTGGGTTTT
CCTTTCTCCACATTCTTGCCAATACTTGTTGACAGCATTTGTTAGTTCCA
CTATATTAGTCAATCTAAGAGGTATAAGGGATCTTAGTGCTATCTTTGCA
ATTTTATGAGGTCTCATTTATCAATTCTTGATCTTACAGCATAAGCTATT
GGTGTTCTGTTCAGAAAAATTTCCCCTGTGCCCATGTCCTCAAGGCTCTT
CCCCACTTTCTTTTCTATTAGTTTCCATGTATCTGGTTTTATGTGGAAGT
CCTTGATGCACTTGTTCTTGACCCTCCCCCCAGAAGATAAGAATGGATCG
ATTTGCTTTTTGTACATGCTAATGACCAAATGAGCCAGCACCATTTGTTG
AAAATGATCTTTTTTCCACTGAATGGTTTTAGTTCCTTTGTCAAAGATCT
AGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACCTGCCCGTCT
CTCTATTTACACCATGTCTGGTTTTTATCTCATTTGTCTCTGTATAATAT
TTTTGAATTCATTTTATGCATGACTCTCACTATTAATGCTTCTTTTTATG
CCTTCTCGTCTTCTTATATATATATCTCATATCCAAATCTCTTTCTCATT
TATTTTCTCTTCTTTTCGTTCTTCATCTCTTTTTCGCTTATATATTTCTT
CTTAATTTCTTCTCTCATCTTTTACTTCTTTTTATCN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTTGAAGCATTTCCTGTCCAA
TTAAGCCAACAGATGTTATTTGAACCCTACAGAGGGGCATTTATTACTTC
AGTGTTTATAAGAAAGTGGCATCCACAAATCTGCTTTCATGATAATTATT
CTCCCCTTCTTCCTCCTCTGTGTCTTTTTCAACCAGTTCAACCTTGTCTG
GAATAACCAATGACAATCACAATTTCAGGATTGTTGTCATTTTTCCAGAA
TTTAAATGACATCTGTCAATAGTGCCTTCCTTTGAGTTATCAACTGGGTT
TCATTGCTCCGTGTTATGTGTGTTATCTCACGGTACTGGTGGGAGGCTGG
ACAGAGCTGGCCTGGTTCACATGGGCTGGAGAGAATGAAGTAGGCAGCAG
GGAGTAAGGCCTCTGTAATTACAGAGGCAGAGAGTATAAACAATTAACTT
CAAGGACAAAGTCAGAGATGCCCAGCTGAGCCAGTCGCCAGGGTCAAGAA
CAGCTTAAGCCGGCAGAAGATCATCCATGCAGCCTGCAAGTCAAATAGTC
GGGGAAAATGAAAACAAGGGTCTGCCCCCAAGACACATGCAGGCGGTTAC
TATCTAAAAGTTAAGTGCTTGCTTTATCCTGTTGTGGCAGATGCTTGCAC
TTTCTTGATGGCCTTTATTTTTTTTCAGGTAGTTTCTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_j16.g1 MSMg01no188_j16.g1 CHROMAT_FILE:
MSMg01no188_j16.g1 PHD_FILE: MSMg01no188_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:18 2005
         (289 letters)



>mm_chr1_23450422_23451110
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccttgaagcatttcctgtccaattaagccaacagatgttatttgaaccctacagaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 ctccttgaagcatttcctgtccaattaagccaacagatgttatttgaagtctacagaggg 260

                                                                       
Query: 61  gcatttattacttcagtgtttataagaaagtggcatccacaaatctgctttcatgataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatttattacttcagtgtttataagaaagtggcatccacaaatctgctttcatgataat 320

                                                                       
Query: 121 tattctccccttcttcctcctctgtgtctttttcaaccagttcaaccttgtctggaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattctccccttcttcctcctctgtgtctttttcaaccagttcaaccttgtctggaataa 380

                                                                       
Query: 181 ccaatgacaatcacaatttcaggattgttgtcatttttccagaatttaaatgacatctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaatgacaatcacaatttcaggattgttgtcatttttccagaatttaaatgacatctgt 440

                                                            
Query: 241 caatagtgccttcctttgagttatcaactgggtttcattgctccgtgtt 289
           |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 caatagtgccttcctttgagttatcaactgggtttcattgctccctgtt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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