NNAAAGATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTAAATCCATCCTCCTTTCATTTGCAATCCATGGT
CAGTCAGAGTGTACCTGGATACTTCTACTAATTGATCTTTATAGCTTTTA
CTACATACATAGTATCTTCTTAACTGGTAGGATAGGGTGTTAATATCTTG
GAATAGGGTGTTATATGACTATCAGTAACAGACACTAATCTACCTCTGAG
TAAGTCAGGTAAATGTCTAACAACTTACATTTCTGGGAAAAGTGTGAATA
AATCCAAAACACTTAACATCTATGGAAATCCAGGAAGGACTGCTGTTTTC
CCCTCCACCAAAGTAAATAATTTCTCTTTCTACACCCCTCCCTCTTGAAT
ATTACAGTGAACACATGCTTAAATGAGACACTCTTGGCCATTTGTATTGA
AGAACCCACACTTAGTTTTGTTTGTTTGGGCCATAAATCTTTATTCTGAA
TGTAAGAAACATAGCAAATGTTGGCATAACCTTTTGGTGCTTTCACTATA
ATTAACAATGGTTTTGAGCCTTGAGTCTACAGAGCTGATGTAGATGCTAT
GATGCTGCTACTTGACTTGTTGCATAGACCACCCTTGTTGCTATAGAAAC
ATTATTGGGAAATCGTATTCAAGATTATGATTTCCACTGGCTTCCTCTGA
AACTTGACGACCGAATATGACTTGGAGTTAGCTTGAAACTATAACTTGCA
AATT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATTAATTGTGTTATGTTTTCAT
TGCCGGAGCATGATTCAGTTTTACACCTTTACTGCAACAGTCATATGATA
CTCTCATATATTCAGAAAATTTTACATTGAGTAAAGAATGAAGGGTTGAT
CATTTTCAACCCTTATTATTGTTGCAGCTCATTGTTAGTTATCCTCCAAA
TTCTAGAAATCCAATGTTTTATAGGCAGTTTTGGAGGAAAGGTTTACTGA
CAGGCACAAGTTGTCTGCTTTTCTGTCTTGCTTCATAGGTAATTAAGATT
CACTTTTTATATCTTTTTCTTGAACCACTGCCTGTGCTTAGAAATAAAAT
TTTAGTCAAGTATTATTTGTAGTTGAGACAAAAGAATTATCTCAGTGATT
TCTTGTCCTTTTTTTCACTTTGTTATTAAATCCTTTTGTGACATCTTCCA
TGGTTGAAATTGAGGAAACAAGTAAAAGCCCTGCTCTGAAGACTGTCAGT
TTAGTGCAGTATGTAGAGTATGTATAAGCAATGTGGAGGTTGTTTTCTAT
TTTTCACCATTTTCTCTCCCATTAACTTCTATTTCTTTTCATAATTTGAT
AGTAACATCCAATATAATTTAACAATTATAACAATTATCTTACCTTATTC
TTTTTTTATTTAATTTTCTAAATCTTGATATATTTACTAACAATTCTTTA
TTCATTCTTATTN

Query= MSMg01no188_p15.b1 MSMg01no188_p15.b1 CHROMAT_FILE:
MSMg01no188_p15.b1 PHD_FILE: MSMg01no188_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:49 2005
         (316 letters)



>mm_chr1_110265754_110266469
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctaaatccatcctcctttcatttgcaatccatggtcagtcagagtgtacctgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctctaaatccatcctcctttcatttgcaatccatggtcagtcagagtgtacctgg 457

                                                                       
Query: 65  atacttctactaattgatctttatagcttttactacatacatagtatcttcttaactggt 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atacttctactaattgatcttcatagcttttactacatacatagtatcttcttaactggt 397

                                                                       
Query: 125 aggatagggtgttaatatcttggaatagggtgttatatgactatcagtaacagacactaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aggatagggtgttaatatcttggaatagggtgttatatgactatcagtaacagacactaa 337

                                                                       
Query: 185 tctacctctgagtaagtcaggtaaatgtctaacaacttacatttctgggaaaagtgtgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tctacctctgagtaagtcaggtaaatgtctaacaacttacatttctgggaaaagtgtgaa 277

                                                                       
Query: 245 taaatccaaaacacttaacatctatggaaatccaggaaggactgctgttttcccctccac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 taaatccaaaacacttaacatctatggaaatccaggaaggactgctgttttcccctccac 217

                       
Query: 305 caaagtaaataa 316
           ||||||||||||
Sbjct: 216 caaagtaaataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no188_p15.g1 MSMg01no188_p15.g1 CHROMAT_FILE:
MSMg01no188_p15.g1 PHD_FILE: MSMg01no188_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:49 2005
         (295 letters)



>mm_chr1_110193080_110193774
          Length = 695

 Score =  497 bits (257), Expect = e-145
 Identities = 284/293 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattaattgtgttatgttttcattgccggagcatgattcagttttacacctttactgca 60
           |||||||||||||| |||||||||||||||||||| ||||||||  | |  |||||||||
Sbjct: 201 ttattaattgtgttgtgttttcattgccggagcataattcagttggagagatttactgca 260

                                                                       
Query: 61  acagtcatatgatactctcatatattcagaaaattttacattgagtaaagaatgaagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtcatatgatactctcatatattcagaaaattttacattgagtaaagaatgaagggt 320

                                                                       
Query: 121 tgatcattttcaacccttattattgttgcagctcattgttagttatcctccaaattctag 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatcattttcaaccctcattattgttgcagctcattgttagttatcctccaaattctag 380

                                                                       
Query: 181 aaatccaatgttttataggcagttttggaggaaaggtttactgacaggcacaagttgtct 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 aaatccaatgttttataggcagttttggaggaaaggtttactaacaggcacaagttgtct 440

                                                                
Query: 241 gcttttctgtcttgcttcataggtaattaagattcactttttatatctttttc 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttttctgtcttgcttcataggtaattaagattcactttttatatctttttc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)