Query= MSMg01no189_a03.b1 MSMg01no189_a03.b1 CHROMAT_FILE:
MSMg01no189_a03.b1 PHD_FILE: MSMg01no189_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:51 2005
(318 letters)
>mm_chr1_30211098_30211817
Length = 720
Score = 586 bits (303), Expect = e-172
Identities = 313/317 (98%), Gaps = 2/317 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagtaagaattctcttctttccatttgttaga--tttttttatcaaatttttat 61
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 520 ggaattcagtaagaattctcttctttccatttgttagatttttttttatcaaatttttat 461
Query: 62 gatgaaagaacacttgccatatcattttgcataaagctacaagccacatttcctccagtt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gatgaaagaacacttgccatatcattttgcataaagctacaagccacatttcctccagtt 401
Query: 122 ataatctagaattgctatcttgtctttcatgaatttttcttgagctgtctatagtgaatg 181
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 400 ataatctagaattgctatcttgtcttttatgaatttttcttgagctgtctatagtgaatg 341
Query: 182 gaaaaggcacagagcatggcagcctgactagatcattactgtatcctggggatcaacata 241
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaaaaggcacagagcatggcagtctgactagatcattactgtatcctggggatcaacata 281
Query: 242 gaacctcattatcgtacatactcatcctctccctcttaactgaggaaaaggtgaaatgat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gaacctcattatcgtacatactcatcctctccctcttaactgaggaaaaggtgaaatgat 221
Query: 302 ggaacacatatatttta 318
|||||||||||||||||
Sbjct: 220 ggaacacatatatttta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 720
Length adjustment: 9
Effective length of query: 309
Effective length of database: 711
Effective search space: 219699
Effective search space used: 219699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_a03.g1 MSMg01no189_a03.g1 CHROMAT_FILE:
MSMg01no189_a03.g1 PHD_FILE: MSMg01no189_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:52 2005
(289 letters)
>mm_chr1_30073905_30074593
Length = 689
Score = 520 bits (269), Expect = e-152
Identities = 284/289 (98%)
Strand = Plus / Plus
Query: 1 aagttaatctgggttaagtgacaaacaattgagtatatacaaatctttgctgattaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagttaatctgggttaagtgacaaacaattgagtatatacaaatctttgctgattaaatg 260
Query: 61 actgaataaatgaatggtggatgtgtagataaatgaactaatcaagatatggtagacgaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 actgaataaatgaatggtggatgtgtagataaatgaactaatcaagatatggtagatgaa 320
Query: 121 aataactatggagaaaaagagaggaaaggcatactagcttacagagacttctgctgatat 180
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataactatggtggaaaagagaggaaaggcatactagcttacagagacttctgctgataa 380
Query: 181 tcatctgtgtacactacaatgagaactgattttaagcagttcagaagctgaatggtttat 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tcatctgtgtacactacaatgagaactgattttaagcagtacagaagctgaatggtttat 440
Query: 241 tgttcctcttgctaatgtgctatgatttcaggccctatagatcagagtc 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttcctcttgctaatgtgctatgatttcaggccctatagatcagagtc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
