Query= MSMg01no189_a20.b1 MSMg01no189_a20.b1 CHROMAT_FILE:
MSMg01no189_a20.b1 PHD_FILE: MSMg01no189_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:55 2005
(286 letters)
>mm_chr1_103328944_103329630
Length = 687
Score = 501 bits (259), Expect = e-146
Identities = 280/287 (97%), Gaps = 1/287 (0%)
Strand = Plus / Plus
Query: 1 gataatctagtcattggtcaaaatccactgtagcttgattcttttactccctgtagataa 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gataatctagtcattggtcaaaatccactgtagcttgattccattactccctgtagataa 260
Query: 61 acaaaaaaatcagataccaatatcttttatataaattgacatacactagcataaatccta 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaaaaatcagatagcaatatcttttatataaattgacatacactagcataaatccta 320
Query: 121 gactcattctttcacatatgtttagaagacagatataaggcacatattcttggctggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactcattctttcacatatgtttagaagacagatataaggcacatattcttggctggtct 380
Query: 181 caaacatattatgtaggtgattactacaatgaaatttcagtgaatctcctgcctctactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacatattatgtaggtgattactacaatgaaatttcagtgaatctcctgcctctactt 440
Query: 241 ttttatttttt-aagtactacaagggtgttttaccaaacacactcta 286
||||| | || |||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttagtgttagaagtactacaagggtgttttaccaaacacactcta 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space: 187806
Effective search space used: 187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no189_a20.g1 MSMg01no189_a20.g1 CHROMAT_FILE:
MSMg01no189_a20.g1 PHD_FILE: MSMg01no189_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:55 2005
(286 letters)
>mm_chr1_103367259_103367944
Length = 686
Score = 511 bits (264), Expect = e-149
Identities = 279/284 (98%)
Strand = Plus / Minus
Query: 1 atgaagacttctaaaataagaagtgaaatttggcatacagtcatagaaacaaaagacatg 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atgaagacttctaaaaaaagaagtgaaatttggcatacagtcatagaaacaaaagacatg 425
Query: 61 gcggctgaagcacatttcatatgaattctctaaatttcctatatgactcttagtcaatga 120
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 424 gcggctgaagcacatttcatatgagttctttaaatttcctatatgactcttagtcaatga 365
Query: 121 gcagatcagttccttcatatttcctgtgaaaaatctcctttttattatttggtagccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gcagatcagttccttcatatttcctgtgaaaaatctcctttttattatttggtagccttg 305
Query: 181 catatacaatgtactcttcttcaacaaaattgtggcttatttaggtccttcatcatgaac 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 304 catatacaatgtactcttcttcaacaaaattgtggcttatttaggtctttcatcattaac 245
Query: 241 agacaatgtggccagctttgaaatcaatccacaaggactgtgtg 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agacaatgtggccagctttgaaatcaatccacaaggactgtgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
