BAC Information

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BAC

Clone NameMSMg01-189N11
Chromosome1 (Build37)
Map Location 49,323,768 - 49,324,077
singlet/doubletsinglet
Overlap geneC230029F24Rik
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924
Downstream geneLOC627430, LOC100041981, EG666962, EG666970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189N11.T7 (MSMg01no189_n11.b1)MSMg01-189N11.TJ (MSMg01no189_n11.g1)
ACCAG380390AG380391
length769774
length of high quality
(start - end)
314 (46 - 359)263 (74 - 336)
definitionCHROMAT_FILE: MSMg01no189_n11.b1 PHD_FILE: MSMg01no189_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:55 2005CHROMAT_FILE: MSMg01no189_n11.g1 PHD_FILE: MSMg01no189_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGAAGGGTAAATTATAATATAAATGTCATATATTTATTAATTA
AAATACCAGATATGTGTTCATAATTCACTACCTAGAGAGCTGTCCCAGGT
TCCTGTAGTCTCCCTGACAACAAAGAAAAAGGTATATCATTGGTACAAGA
AAGATGAATATGGAATGTGTTCTCTTCTATATGTGGTTTTTAAATATTAA
GTCCATAGACCAGCACCAAGTTGCAAAGCATACACTTTACATACAGAGTA
AGGGAGTAGGCTAGACTGATCAATCTTGTTAGGAAAGGAAGATAGAACAG
ATTGTTATGTTTTTACCTCCCCCCCCCATATAAGGCTCAAGTGGAGAGAG
GAAGATGGGATTGAGGGGGAGAAAAATAAAAATTTCCGTGGTGGCGGTTT
TTCTTTCCTCTTCCCCACCCCCCTTTTTTCTCCTTTTTTCCCCCCCCCTA
TTCGTTACATTTATCATTTATTCTTTCACCCTCCTCTTTATCCCTTTCCC
TCTTTTCTCCTTCATTTTTTTTCTTTTTCCCCTTCTCTTTCCTTCCCTTT
TTCCCTCCTCTCCTCCTCCTTCTTCTTTTTTTCTCCCTTCCCCTTTTTTT
TTCCCTCTCTCTTCTTATTCCCTCCCTTCACCCTCTTTTCCCTCCCTTCT
TTTTATCCTTTCCGCCCTTTATTTCCCCTTTTTTTATATTCCTTCCCCCT
CTTCTTTTTCTCCCACTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTACCCGCGAAATTCAGTTTGTGACAATTTTGTTGAAT
ATTTTTGCTTTGATATTCTTAAGCCAAATTGGTCTGAGGTTATACTTTTT
TTGTTGAGTCCTTGTGTGGGTGTGGCTCGAGTCAAAGTAATTGTGGCTTC
ATAGATTGAATTAAGTAGTGTTCCTTCTGTTTCTATATAACTTGAGGGGT
GTTGGTATTAGCTCTTCTTTGAATGTCTGGTAGAATTCCACTCAAAAGCT
AACCAGTCATGGGCTGTTTGTTTGTTTGTTTGTTTTTGCCCGTTTGCTTG
ATCGATTTTTTTTTTTTTTCCCCCCCCCCCCCATATAAAAAAATAATAAT
TTAAACAATTTCTCCTCCCCCAAAAAAAAAAAAAAATAATTTCTCCTTGT
GTTCTTCCTCCCCTTCCCTTCCCACCCCCCTTTATTTCATATTATACCCC
CCCTTCCCTTTTTTCCCCTTTTTTTTCTTTTACCTCCCTTTTTAATTTTT
TCCATCCCCCTTTTTTCCCCTCTTTCATCTTACCCCTTCTTTTTTCCCCT
TTTTCTCCCCTTCCTCCTTTCCCCACTTTTTATTCCTTTTCCCTTCACAC
CATTCTATCCCCTTTACTCCTTTTTTTTCCCTTTCTTTTTTCCCTTTTCC
CTCCTCTCCATACCCTTTTTATCTCTCCTTCCCCCCCTTCTCCTTTTATT
CTTATTTTTTTTATTTATACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_n11.b1 MSMg01no189_n11.b1 CHROMAT_FILE:
MSMg01no189_n11.b1 PHD_FILE: MSMg01no189_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:55 2005
         (314 letters)



>mm_chr1_49323508_49324221
          Length = 714

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagaagggtaaattataatataaatgtcatatatttattaattaaaataccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattccaagaagggtaaattataatataaatgtcatatatttattaattaaaataccag 511

                                                                       
Query: 65  atatgtgttcataattcactacctagagagctgtcccaggttcctgtagtctccctgaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atatgtgttcataattcactacctagagagctgtcccaggttcctgtagtctccctgaca 451

                                                                       
Query: 125 acaaagaaaaaggtatatcattggtacaagaaagatgaatatggaatgtgttctcttcta 184
           |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 450 acaaggaaaaaggtatatcattggtacaagaaagatgaatatggactgtgttctcttcta 391

                                                                       
Query: 185 tatgtggtttttaaatattaagtccatagaccagcaccaagttgcaaagcatacacttta 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 390 tatgtggtttttaaatattaagtccatagaccagcaccaagttgcaaaccatacacttta 331

                                                                       
Query: 245 catacagagtaagggagtaggctagactgatcaatcttgttaggaaaggaagatagaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 catacagagtaagggagtaggctagactgatcaatcttgttaggaaaggaagatagaaca 271

                     
Query: 305 gattgttatg 314
           ||||||||||
Sbjct: 270 gattgttatg 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)