BAC Information

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BAC

Clone NameMSMg01-189O06
Chromosome1 (Build37)
Map Location 103,147,796 - 103,148,073
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189O06.T7 (MSMg01no189_o06.b1)MSMg01-189O06.TJ (MSMg01no189_o06.g1)
ACCAG380421AG380422
length741736
length of high quality
(start - end)
320 (46 - 365)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no189_o06.b1 PHD_FILE: MSMg01no189_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:58 2005CHROMAT_FILE: MSMg01no189_o06.g1 PHD_FILE: MSMg01no189_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTCGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAGC
AGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCAGCACACATGGCTC
TCCTCAGAGATTACTGGCAGTATGCACGCAATTGCTCTCAGCACGGCTCT
CCACACTTCACAATATTCACAAATAATATAAAATACCTTTGTGTGACTCT
AAGGAAATGAAAGATCTGTATGATAAGAACTTCATGTCTCTGAAGAAAGA
AATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTG
GCAGGAACAATATTTTTTTTATGCCTGCCGCCCCCCAAAAGCAATCTACA
TATTCAATGAAATCCCCATCAAAATTCCAACTCAAATCATCAACGAATTA
GAAAGGACAATTTGCAAATTCATCTGGAATAACAAAAAAACTATGATAGA
ATAAATTCTTCTCAATGATAAAAGAAGCTTTAATGGAATCACCATACCTG
ATCTTAAGCTGTACTACAGAGCAACTGTGATAAAAACTGCATGGTACTGG
TACAGGGACAAACAGNAAAACCATTGAATAAGATTTGAGAACCCAAAAAG
GATTCCCCCCCCAATGGCCACTGGATTTTGAAAGGGGAAATTAAAACCAC
CCCGGGGAAAAAAAACGCCTTTTCTCACAAGGGGGGCGGGG
TCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTTTTTTTCTCAAGGGAGTG
GGGTAGAAGTGCTGAATTAATAAATTGATACACATATATGAAAGCTGTGA
AAACTCATGGAGTAGCCAGAGACCAGGGAAAGACCAGGCAGGACCAAGGT
GGTGAAGCACATAGAAAAGTGTAGTCCTTTGTATCCCAAGCAAACCTTAA
TATTGCATGGCCCATATCTTTAGCAAACTGATATACTGAACCAGCACAGA
TGGCTGTAGGAATCCAGCCAGATTATAGTGGTTATTGCATTAACTTTTCC
AAGGAAGATTTTTTTTTTTCCCCCATCTAACCCAGAATGGACAGAATAAG
AAAATGTTTTCTATTCAAGTCTAACTAAATGAACCTGAGAATATATTGGA
ACATTCATGCATATCTTATGTGTGGAGGATTATACCTTATTTGGAAAAGA
ATCAGGCTTAAGGGATGCCCATAAGATGTTATTCTCTTGTATAATATGAA
ACACTTACTTATAGGGGCTTATAACCCCAAGACATACCTTATATACTGCT
GCATACAGACTATGCTTCACTTGATATTCATCATTTTCCTGGCTCTTGTT
ACACAACAGTCATCCATATGATTGTCCTCGTCCACTTTTAATTACCTATC
CTCGGATAAACTTACGATTTCCATTTAACTTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_o06.g1 MSMg01no189_o06.g1 CHROMAT_FILE:
MSMg01no189_o06.g1 PHD_FILE: MSMg01no189_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:58 2005
         (285 letters)



>mm_chr1_103147592_103148276
          Length = 685

 Score =  522 bits (270), Expect = e-153
 Identities = 276/278 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ttttttttctcaagggagtggggtagaagtgctgaattaataaattgatacacatatatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttttttttctcaagggagtggggtagaagtgctgaattaataaattgatacacatatatg 423

                                                                       
Query: 65  aaagctgtgaaaactcatggagtagccagagaccagggaaagaccaggcaggaccaaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaagctgtgaaaactcatggagtagccagagaccagggaaagaccaggcaggaccaaggt 363

                                                                       
Query: 125 ggtgaagcacatagaaaagtgtagtcctttgtatcccaagcaaaccttaatattgcatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggtgaagcacatagaaaagtgtagtcctttgtatcccaagcaaaccttaatattgcatgg 303

                                                                       
Query: 185 cccatatctttagcaaactgatatactgaaccagcacagatggctgtaggaatccagcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cccatatctttagcaaactgatatactgaaccagcacagatggctgtaggaatccagcca 243

                                                 
Query: 245 gattatagtggttattgcattaacttttccaaggaaga 282
           || || ||||||||||||||||||||||||||||||||
Sbjct: 242 gaatagagtggttattgcattaacttttccaaggaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)