BAC Information

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BAC

Clone NameMSMg01-190F20
Chromosome1 (Build37)
Map Location 103,791,735 - 103,792,388
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190F20.T7 (MSMg01no190_f20.b1)MSMg01-190F20.TJ (MSMg01no190_f20.g1)
ACCAG380737AG380738
length7061,613
length of high quality
(start - end)		657 (46 - 702)---
definitionCHROMAT_FILE: MSMg01no190_f20.b1 PHD_FILE: MSMg01no190_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:35 2005CHROMAT_FILE: MSMg01no190_f20.g1 PHD_FILE: MSMg01no190_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGGAGAATAATTTATATTTGTGTGTAAGCATTTATAATATTCT
TCCTGTTTTCTCTGTTCCAGTTTTTATATCAGCACATTTACTCTTCCATC
TAAATAATCTGTTCTATCTTGATTGCTAAGATAGTTGCTAAGGTTTTTGA
GCTCTTATTTCTAACCACTCCCATATATGTCAAAGTATGTTGTTCCTACT
TTCCTTGTTCTACTAACATGAGTTTCAGTTAAGATGTTTTTCTTTTCTTT
TTTTTCTCACAGATATCTAAGTACTATTTATTTGTTTGTTTATTTATCTA
TTTATTTATTTTTCCTTCCTTTACTGCCAGGCTGTTTGCCAATGTATGTT
TTGATATTTTAACCCATTCATCTATTATATTTGCTACTGGGATATAACAG
TCATCTTTTGCTATATTTTGAAAACTGTTCTTTTGTTCTAGATTTTTTCA
TTTTCTGCTTTTGTCTTTTAAGTTAGTCATTTCAGCTCTTTGAAAGGATT
CAATGCAATTTCCATCAAAGTCCCCAAAAAATACTTCAAAGATATGGAAA
GAACAATTCTCAAATTCATTTGTAAAGGAAAAAAAAACCCTACTAGCAAA
CACAATACTTAATAATAAAATAATGGCTGGGGGAATCACCATCTCTGACC
TCAAGN

ACAATATAGAAACACTACAATAACATATTNCTCTATAATACTAGTAATGG
TTGCNCGCGGGCGCGTTACGTATTAAATTATGTGGTATGATAAAGACAGA
GGAGGGTGTGCAGCGCGTGTAGGCGATAGAGTGAAGCGTGTGACGCGTAC
GAATAATAGCGTAGGAGNGAGAAATTATAAAGAGAGAGAGAATNACAGAA
CGGAGAGAAATATANGNGTGCANGAATAACGTAGGAAGTAGAGAGGGTAG
AGACGAGGAGAGGAGAGGGAAGGAGGAGGAGANAAAGGAAGTGAGAGGTG
TGGGAGACGAAGGNCGAAGCGGAGGAGAGCAAGCGAGAATNATGAGAGTG
GTAATCGTATATATTGTGTGATGACGCGGCGGTAAGTGTGAGGGATTAAG
AGGAGTAGGAGGAGGTGGCGTGTGTTAGCGGAGGCGGGATGATGAGAAGT
GTCTAGCATTATTCGGAGGTCGTGCTGTGTATATGCACGCCTCGATGATA
GTGGTGACGATTGATGTCGCGGGATGATGCGGTATAAGTATACGTGTGCG
CGGTGANGATGCGTGTCAGATGTGTGGAGATGTGAAAGTCGAGAGAAGGT
GAGGTAGTATTGGAGATGTTTTCAGTCGCGCGGACCGCGACGNCTAGTAG
TAACAAGTAATATGATTGGTAGTACGGAGAGTAATGGCAGATGAGTAATG
GTGTGTTTTTGTGTTACTATAGTAGAGGGTATGAGGCGGGCTGGTGTGAC
GTGTTGGTAGACCGCGCGGACGNAGAAAGAAGGATATTGTGGAATGGCTT
TATCGTCCACGCCCGCCGCCCCGCACGCCGCCACGCCGCATGATATTGTG
TGTTANAATAGATGGTTAGAGATATAGGTGGTTGTGGATGTGGTGTGTGG
GACGGAGTTAGCATACCCTTTGCATTACGACACAGAAGAGAGAATAATAT
AATNATATATACCCTCCGGTGATAGTGTGTAGAGCGGGAGCGGGATAGAC
GATACATGTATATTATGTCGGTGCGCGTCATTGTGTATGTGTGAGATTTG
AGTTCGTTATTTATGGTGAGCGTCGAAATTATATTATAGACGACAGCGTT
TTCTGTGGTGTTATCGTGTCTGTGCGAGCGCGGTCGTGGTTTATGGAAGC
ATTGATGTGTGATGTTGTGTTGGTTCGTTTATAGTATGAGCGGTGTCAGA
ANGATTAGGTTGTGAGAGTTGTGATATTAGTAACAGAGAGATATATAAGA
TAGCAGCGAGAGAATTATGAGCTATGTGTGTGTGTGAGTAATGTCGCGCG
TGGTGCGCGATATGCGTCATGGCGTGGTGTTAGACTATGTGTGTTGTGAG
CGTGTGTGATGAGTATGCGCCGTGTGTGTAGTGTGTTATTGATACACAAT
GTGTTTGGTGGAGNAGCACATTGTATTTCTGTAATGTGCTAGTGATGTGA
TGTATTGATGTGTGTGACGTGTGTGTGGGTGTGCAATACAGGTATAGTGA
GATGATGGAGTNNANATACTATATCTANGGTAGNTCAGTGTAGCACGTGG
TGTATATATGATAGGNGAGTGTTGAGAAACANCGATTNGTGTGTGTGGTC
TACAAGTTTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_f20.b1 MSMg01no190_f20.b1 CHROMAT_FILE:
MSMg01no190_f20.b1 PHD_FILE: MSMg01no190_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:35 2005
         (657 letters)



>mm_chr1_103791376_103792432
          Length = 1057

 Score = 1210 bits (626), Expect = 0.0
 Identities = 647/654 (98%), Gaps = 1/654 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcaaaggagaataatttatatttgtgtgtaagcatttataatattcttcctgtttt 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 gaattcaaaggagaataatttatatttgtgtgtaagcatttataatattcttcctgtttt 954

                                                                        
Query: 65   ctctgttccagtttttatatcagcacatttactcttccatctaaataatctgttctatct 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  ctctgttccagtttttatatcagcacatttactcttccatctaaataatctgttctatct 894

                                                                        
Query: 125  tgattgctaagatagttgctaaggtttttgagctcttatttctaaccactcccatatatg 184
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 893  tgattgctaagatagttgctaagttttttgagctcttatttctaaccactcccatatatg 834

                                                                        
Query: 185  tcaaagtatgttgttcctactttccttgttctactaacatgagtttcagttaagatgttt 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  tcaaagtatgttgttcctactttccttgttctactaacatgagtttcagttaagatgttt 774

                                                                        
Query: 245  ttcttttcttttttttctcacagatatctaagtactatttatttgtttgtttatttatct 304
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 773  ttcttttcttttttttctcacagacatctaagtactatttatttgtttgtttatttatct 714

                                                                        
Query: 305  atttatttatttttccttcctttactgccaggctgtttgccaatgtatgttttgatattt 364
            |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 713  atttatttatttttccttcctttattgtcaggctgtttgccaatgtatgttttgatattt 654

                                                                        
Query: 365  taacccattcatctattatatttgctactgggatataacagtcatcttttgctatatttt 424
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653  taacccactcatctattatatttgctactgggatataacagtcatcttttgctatatttt 594

                                                                        
Query: 425  gaaaactgttcttttgttctagattttttcattttctgcttttgtcttttaagttagtca 484
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593  gaaaagtgttcttttgttctagattttttcattttctgcttttgtcttttaagttagtca 534

                                                                        
Query: 485  tttcagctctttgaaaggattcaatgcaatttccatcaaagtccccaaaaaatacttcaa 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533  tttcagctctttgaaaggattcaatgcaatttccatcaaagtccccaaaaaatacttcaa 474

                                                                        
Query: 545  agatatggaaagaacaattctcaaattcatttgtaaagg-aaaaaaaaaccctactagca 603
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 473  agatatggaaagaacaattctcaaattcatttgtaaaggaaaaaaaaaaccctactagca 414

                                                                  
Query: 604  aacacaatacttaataataaaataatggctgggggaatcaccatctctgacctc 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413  aacacaatacttaataataaaataatggctgggggaatcaccatctctgacctc 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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