BAC Information

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BAC

Clone NameMSMg01-190G19
Chromosome1 (Build37)
Map Location 17,862,542 - 17,987,466
singlet/doubletdoublet
Overlap geneLOC665564
Upstream geneJph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1
Downstream geneLOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190G19.T7 (MSMg01no190_g19.b1)MSMg01-190G19.TJ (MSMg01no190_g19.g1)
ACCAG380775AG380776
length763683
length of high quality
(start - end)
368 (396 - 763)156 (435 - 590)
definitionCHROMAT_FILE: MSMg01no190_g19.b1 PHD_FILE: MSMg01no190_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:40 2005CHROMAT_FILE: MSMg01no190_g19.g1 PHD_FILE: MSMg01no190_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,862,542 - 17,862,909)(17,987,313 - 17,987,466)
sequence
NNTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTCAATTCCACTTGGGAGGGAGAAGAAAGCAATCACA
GGAGGTGAAGGGTCAGAGGGAGGGACAAGTAGCCGTGGGAAACGGGACAA
GTAGGAGAAGAGGGAAACATGATCAGGTATTCGGTGGGGCGACAGGACTG
AAGCCCCAAGGGGCAGCAGAAATAGGCAACCTCAGAAGGTAGGAGTCCGG
GCAACCTCCAGAAAGTACCAGAGACATGGGAGGTGACAGACTTTCAGGAC
TCAAAGGGAGGGACCTTAAATGAAATATATTACAATGGGGAATGGGAAAT
TGTAGAGCCCACCTCCAGTAGTTAGTCACTTCCCCCCCCCCCCGTTGGTG
TTGCCATCCCACAGTCAAAATCTCTGACCCAGAGTTGTTACTTTCTGAAA
GAACTACAGAGACAAAAATGGAGAACAGACTAAGGAAAAGGAGGTCCAGT
GACAGGCCCAGATTGGGATCCAGCTCAAGGGGAGGCTCCAAGGCCTGAAA
ATAAAATAAGTGTCCTCTGCACCAGATACCTCCTGTTATAACCACTATAC
TTACTGTTTACTAACCTTCTGTTAAGGACTGCATTTTAATAACGTTTTTA
AAATGAGGACAAAATTAATTTGTCAAAGACAGAACAACTGGCAATTGCCT
TTTGAATTATAACCCATTAGGCTAAGTAAAGAGTCTGAAGCTGATACTTT
GGGGCGATTTTGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTCCTTTTTTTTTTCCTTCAA
GACCTTTACCCTTTGCAATGTATAAAAATAAATAATCAATCGTTCTGCGT
ATGGAATGTCACAGATGCCAGCAGAAGGAACTGCCACCAGCATTATAAGT
CACTGCAATCAATCCGTTTCTTGTTCCTCCGTCTTCTAAAGTGGAAATTA
GACTGAAATTAAGTTGGATTGCATCATCATTGTCAGTGTGGATACAGGAA
GAACGCCAGCCAAGGGCGCTCTGATTGGGACATCTACTGCATTTTCCACT
GGTTTTTTTTTTTTCCCCCCCCCGCTTCACAGAGGTCTGTCTTAGGCTCC
ACATTCTCTACTTCATCTGGAAACTCTGGGCACAGCCCTAAACTGGAATT
CTTAAAATAGTGGACCAGGTGAGACTTTGACCGGTCATCAAAAAAACAAA
AACAAAACAAACAAACAAAAAACCAAGATTTTGGGGAATCTCTTGGCACT
GTATCCTGGAAATTTCATGCCCTGCATTGAGAAGTTGTGTTCCGTCTCCC
TTTAGAATCTGTCCCAGTCACTTCACGAGACTTTGGAGAATTCCCACAAG
CTGTTTCTCTGTAACTGCCTCTTTTAAGAGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_g19.b1 MSMg01no190_g19.b1 CHROMAT_FILE:
MSMg01no190_g19.b1 PHD_FILE: MSMg01no190_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:40 2005
         (368 letters)



>mm_chr1_17862342_17863109
          Length = 768

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgttgccatcccacagtcaaaatctctgacccagagttgttactttctgaaagaact 60
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 201 tggtgttgccatcccacagtcaaaatctctgaccctgagttgttcctttctgaaagaact 260

                                                                       
Query: 61  acagagacaaaaatggagaacagactaaggaaaaggaggtccagtgacaggcccagattg 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 acagagacaaaaatggagaacagactgaggaaaaggaggtccagtgacaggcccagattg 320

                                                                       
Query: 121 ggatccagctcaaggggaggctccaaggcctgaaaataaaataagtgtcctctgcaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatccagctcaaggggaggctccaaggcctgaaaataaaataagtgtcctctgcaccag 380

                                                                       
Query: 181 atacctcctgttataaccactatacttactgtttactaaccttctgttaaggactgcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacctcctgttataaccactatacttactgtttactaaccttctgttaaggactgcatt 440

                                                                       
Query: 241 ttaataacgtttttaaaatgaggacaaaattaatttgtcaaagacagaacaactggcaat 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaataatgtttttaaaatgaggacaaaattaatttgtcaaagacagaacaactggcaat 500

                                                                       
Query: 301 tgccttttgaattataacccattaggctaagtaaagagtctgaagctgatactttggggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgccttttgaattataacccattaggctaagtaaagagtctgaagctgatactttggggc 560

                   
Query: 361 gattttgg 368
           ||||||||
Sbjct: 561 gattttgg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no190_g19.g1 MSMg01no190_g19.g1 CHROMAT_FILE:
MSMg01no190_g19.g1 PHD_FILE: MSMg01no190_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:40 2005
         (156 letters)



>mm_chr1_17987113_17987668
          Length = 556

 Score =  275 bits (142), Expect = 1e-78
 Identities = 151/154 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccctaaactggaattcttaaaatagtggaccaggtgagactttgaccggtcatcaaaaa 60
           ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||
Sbjct: 354 gccctaaactggaattcttaaaatagtggattaggtgagactttgaccggttatcaaaaa 295

                                                                       
Query: 61  aacaaaaacaaaacaaacaaacaaaaaaccaagattttggggaatctcttggcactgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aacaaaaacaaaacaaacaaacaaaaaaccaagattttggggaatctcttggcactgtat 235

                                             
Query: 121 cctggaaatttcatgccctgcattgagaagttgt 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 cctggaaatttcatgccctgcattgagaagttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)