BAC Information

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BAC

Clone NameMSMg01-190I15
Chromosome1 (Build37)
Map Location 45,327,310 - 45,327,620
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640
Downstream geneCol3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190I15.T7 (MSMg01no190_i15.b1)MSMg01-190I15.TJ (MSMg01no190_i15.g1)
ACCAG380852AG380853
length745693
length of high quality
(start - end)
315 (56 - 370)275 (75 - 349)
definitionCHROMAT_FILE: MSMg01no190_i15.b1 PHD_FILE: MSMg01no190_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:49 2005CHROMAT_FILE: MSMg01no190_i15.g1 PHD_FILE: MSMg01no190_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTAAATACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCCCATTTTAGGTGAATGAATTGACATATTCCTAA
TCACTACTCTCCTGCCACAGTCAACTAAACACGTTGTTTATCCAACATGG
AACACAGTAGTTGGGCGTCAGGTTATATAAATATGGGGCCATCATTTGAA
GTTAGTAGAAATTGTGTGCACTATTTGTTTTGGAAATCTTGGAGGAAACT
ATGCTGGATATGAAAAATTTTGATGAACTTTTGATTCCTAGAACTAGTCT
TCCATCATAATTTTGTACCAGCTTTTCTCTTAAACCCTATTTTATTTTTC
CCTTTACATATTCTCTTGCTATGCCTTTGCACCCCGCCATTTTCAACTGA
AATGCAGCAACATGACATGACATCAGGAAAAAATACACAATTATATGTTC
TTTTAGAGTACTTTCATTAAAAAAAAGCCATATTTTAAGGTTCTGATACA
CAAGTGTCAGAATAAACACCATTTCAGAAGTTGTAAATTAACATTTGCTA
TTTCTAGATGGTAGGAAACTGCTATGCTTAAATGATGATATAGAACCCCA
AATCACATAAGCACTGGCTGTGCCACTTACTACAGTGAGAATGTTCATTA
AATTTTATTTCTAGCTTACTACAAATGATAGCAGCTGCTTGATAGATTAC
CTCCTCATTTTTCAGTTCTCAAGAATACTATTTTCCAGTCAACAN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAGACCAAATGGCTGA
GAATCACCTGGAAAAATGTTCAAAATCCTTAATCATCAGGGAAATGCAAA
TGAAAGCATCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAACTCAGGTGACAGCAGACGCTGGCAAGGATGTGGAGACAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAGCCATTCTGGAAAT
CAGTCTGGCAGTTCCTCAAAAAAATTGGACATAGTACTACTGGAGGATCC
TTTATACTTCTCCCGCCCCCCCTACAGAAGATGTTTCAACTGGTAAGAAG
GACACATGCTGCACTATGATCATAGCAGCCTTATTCATAATAACCAGAAG
CTGGAAAGAACCTAGATATCTCTCAACCTAGGAATGGATACAGAAAATAT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGATTGACCTGGAGGGCATCATCCTGAGTGA
GGTAACCTAATCACAAAAGAACTCAAATGATATATACTCACTGATAAGTG
GATATTATCCCAGAAAGTTAGAATACCCAAGATATAAGATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_i15.b1 MSMg01no190_i15.b1 CHROMAT_FILE:
MSMg01no190_i15.b1 PHD_FILE: MSMg01no190_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:49 2005
         (315 letters)



>mm_chr1_45327105_45327820
          Length = 716

 Score =  466 bits (241), Expect = e-136
 Identities = 295/313 (94%), Gaps = 5/313 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctcccattttaggtgaatgaattgacatattcctaatcactactctcctgccacag 65
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 206 aattctcccattttatgtgaatgaattgacacattcctaatcactactctcctgccacag 265

                                                                       
Query: 66  tcaactaaacacgttgtttatccaacatggaacacagtagttgggcgtcaggttatataa 125
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 266 tcaactaaacacgttgtttatccaacatggaacacagtagttgggcatcacgttatataa 325

                                                                       
Query: 126 atatggggccatca-tttgaagttagtagaaattgtgtgcactatttgttttggaaatct 184
           |||||| |||| || |||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct: 326 atatggtgcca-caatttggagttagtagaaattgtgtacactatttgttttgaaaatct 384

                                                                       
Query: 185 tggaggaaactatgctggatatgaaaaattttgatgaacttttgattcctagaactag-t 243
           |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct: 385 tggaggaaactacgctggataagaaaaattatgatgaacttttgattcctagaactaggt 444

                                                                       
Query: 244 cttccatcataatttt-gtaccagcttttctcttaaaccctattttatttttccctttac 302
            ||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 -ttccatcataatttttgtactagcctttctcttaaaccctattttatttttccctttac 503

                        
Query: 303 atattctcttgct 315
           |||||||||||||
Sbjct: 504 atattctcttgct 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space:   216342
Effective search space used:   216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)