BAC Information

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BAC

Clone NameMSMg01-190K05
Chromosome1 (Build37)
Map Location 19,260,238 - 19,260,519
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b
Downstream geneLOC100040198, LOC226901, Pkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190K05.T7 (MSMg01no190_k05.b1)MSMg01-190K05.TJ (MSMg01no190_k05.g1)
ACCAG380917AG380918
length744769
length of high quality
(start - end)
---283 (130 - 412)
definitionCHROMAT_FILE: MSMg01no190_k05.b1 PHD_FILE: MSMg01no190_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:58 2005CHROMAT_FILE: MSMg01no190_k05.g1 PHD_FILE: MSMg01no190_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGAAGNGGGAGGAAAAAGTGGGGGGCTNAAAGAGGCNTTTTCGGAGNA
GGGGGNGNNNNNNNNNNTGGCAAAAAAGGGGGNNNAGNNGNNNNGNNNNN
NGNNNNNNNNNNNNNTTTTTGGGCGGGAGAGAGGGGAAGGANNGNGAGAN
NGAGNGNGAAAAGGAGGAAAGGGAAAGAGAGAGAAGAGGAGAAAGNAGAG
GGGGAGGGGAGGAGAAGAAAGAGGAAGAGGGGNAGGAGGAGGAATGTTTG
TGGGAGGAAAANGAGGGGGGAGAAAAGAGAGGAGGAGGGGAGAAAAAGGG
ANAAGGGTTGAGTGGTTTAGAAGAGAGAGGGGGAGGAGGGAATATTTTGT
AGTTTTCCCGCCGCCCCGAAGAAAAAGGGGGGNGGGGGGGGGGGGGGGGG
GGAAAAAAGNNAAAAAAAAAAANGGGGNNNGGGGNNGGGGGNNNNNNNNN
NNNNNNNNGNGGNNNGNNNNNGGGGGGGGGGGNGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGNNGGGGGGGGGGGGGGGGNNGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGTTTTTTTTTTGGGTGGGGGGGNNNGGGGG
GGGGTGGGGGGGGTGGGGGTGGTGTTTGTGTGGGGGGGGGGCGG
CCCCNNNNTTTCCCCCNNTTCTCTACCTCTCTCCCNTTNTTTTTNNNNNN
TTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTATACCTTGTTATGTCCT
GCTGGAGCTGGCTACGTGCCTTTTTGGCACCCTTCTTGAGGGCAAGGTGT
GGGAAGTAAGTGGAAGGAATCATGGTTCTTACAGCTGGGGAACATCTGGA
TGAAACAAAATGTGCCCCACAAAGCTCAAGAAGTATCGAACGCTGAAATA
GCCAGTTGAAGTAATTGTTTTTTGTTTTGTCTTGTTTTGTTTTTCAGACC
TGTGAGATGCAGGGAAAATCTAAACCTTTTCAATTCTGTTCTGTGGTTAG
GGTACCCAGACTTCTTTTTCCTCTCCCCCCCCCCGCTGTCTGAGGTAGGC
TAAGTAAATGGCAGAGCTTGTGAAGAAGATTAAATGAAGGTTATTGTGGA
TGCTTCTGTCTTAGGGAGTTTGAGTTCAGGAGAGAGACTCAAAATGAGAA
CAGAGGGGAGAAAAGGATAAAGCAGAGAAACATCATTGATTTATTGACGC
TGGGGTGGCTGAGGATTGATCATGTTGGGACTCTTTTTCTTTTCCTTCCC
TTTCCCTCTTTCTTTCTCTCTTTCTTTTCTCTCTCTCTTCTTCCGTCCCT
TCTTCCTTCCTTCCTTTCTTTCTTTCCTTCCTCCATACTTTCTTCCTTCC
TTTCTTCCTTTATTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_k05.g1 MSMg01no190_k05.g1 CHROMAT_FILE:
MSMg01no190_k05.g1 PHD_FILE: MSMg01no190_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:58 2005
         (283 letters)



>mm_chr1_19260038_19260720
          Length = 683

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttataccttgttatgtcctgctggagctggctacgtgcctttttggcacccttcttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttataccttgttatgtcctgctggagctggctacgtgcctttttggcacccttcttga 260

                                                                       
Query: 61  gggcaaggtgtgggaagtaagtggaaggaatcatggttcttacagctggggaacatctgg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcaaggtgtgggaagcaagtggaaggaatcatggttcttacagctggggaacatctgg 320

                                                                       
Query: 121 atgaaacaaaatgtgccccacaaagctcaagaagtatcgaacgctgaaatagccagttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaacaaaatgtgccccacaaagctcaagaagtatcgaacgctgaaatagccagttga 380

                                                                       
Query: 181 agtaattgttttttgttttgtcttgttttgtttttcagacctgtgagatgcagggaaaat 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaactgttttttgttttgtcttgttttgtttttcagacctgtgagatgcagggaaaat 440

                                                     
Query: 241 ctaaaccttttcaattctgttctgtggttagggtacccagac 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaaccttttcaattctgttctgtggttagggtacccagac 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)