BAC Information

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BAC

Clone NameMSMg01-190K12
Chromosome1 (Build37)
Map Location 102,192,486 - 102,192,788
singlet/doubletsinglet
Overlap geneC230078M14Rik
Upstream geneLOC633295, EG666200
Downstream geneLOC100041909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190K12.T7 (MSMg01no190_k12.b1)MSMg01-190K12.TJ (MSMg01no190_k12.g1)
ACCAG380929AG380930
length700705
length of high quality
(start - end)
311 (45 - 355)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no190_k12.b1 PHD_FILE: MSMg01no190_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:59 2005CHROMAT_FILE: MSMg01no190_k12.g1 PHD_FILE: MSMg01no190_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTCTGACTTCCTGCCTCAAGATAATCACCAAGTCTATTAGCAGA
GGAATATTAAGGGAACAGGTTTTAATACACAGTGAAATAACTGATTATAT
TCATGAATTGTCTCTATGTTTATTTTTAAATTGCACGTGTGTCACAGTGT
TCATAATGCGAACTTGTGGGAATCAGTTCTTCCCTTTAATAATATGGATC
CTTGGAATCCAAATAAAATCTCAGGCCTGTTAGGCTTTTCCTTTACTTGC
TGACTGATCTCACTTGCACAAGTCTCTATCTTTAAATTTTTTGTGACAAA
ATTCTTATAAACTTCGCTCCACCAAGTCTCTAAAAAACATATATGGAGGG
CCAAACTGAGTTATAATTGATTCACTAGTGAGAGAAAAGATTCCCAAGGC
CTTGAACTAGAGTTAGAGAGAAACTAAGGGTTTTTCCCCTTTATTTGTGG
CATTTTCTGAAGTTAGTCCATTAAGTAAAGAGAGAGAGAGAAAGAGAGAG
AGAGAGAGAGAATATATTGTCCTAAATGAAATCTGTCTTATACTTTTCAC
CTTAGGGTAGAGCAACATAATTATTGCCCTCTTGTCTGTATATCAGTGAA
ATAACCAGGAATCATAAAGGGGCATAGAATGCTACATGTCTTACAATCTA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTCGAGGAATACCGAAAGGCT
GAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGA
TTAAAAATTCAGGTGACAGCCTATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGAAA
ATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATC
CCGTATTACCTCTCCTGCCCCATATATCCAGAAGATGTCCCAACCAGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGTCCCTCAACAGAGGAATGGATACAAAAA
AATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAATTTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACCCAATCACAAAGAACTCAAATGAAATGTACTCACTGATA
AGTGGATATTAGCCCAGAAACTTAGTATAGCGAGATATAAGGTACAATAT
GCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_k12.b1 MSMg01no190_k12.b1 CHROMAT_FILE:
MSMg01no190_k12.b1 PHD_FILE: MSMg01no190_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:59 2005
         (311 letters)



>mm_chr1_102192282_102192992
          Length = 711

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattctgacttcctgcctcaagataatcaccaagtctattagcagaggaatatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaattctattctgacttcctgcctcaagataatcaccaagtctattagcagaggaatatt 448

                                                                       
Query: 65  aagggaacaggttttaatacacagtgaaataactgattatattcatgaattgtctctatg 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagggaacaggttttaattcacagtgaaataactgattatattcatgaattgtctctatg 388

                                                                       
Query: 125 tttatttttaaattgcacgtgtgtcacagtgttcataatgcgaacttgtgggaatcagtt 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttatttttaaattgcatgtgtgtcacagtgttcataatgcgaacttgtgggaatcagtt 328

                                                                       
Query: 185 cttccctttaataatatggatccttggaatccaaataaaatctcaggcctgttaggcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttccctttaataatatggatccttggaatccaaataaaatctcaggcctgttaggcttt 268

                                                                       
Query: 245 tcctttacttgctgactgatctcacttgcacaagtctctatctttaaattttttgtgaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcctttacttgctgactgatctcacttgcacaagtctctatctttaaattttttgtgaca 208

              
Query: 305 aaa 307
           |||
Sbjct: 207 aaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)