BAC Information

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BAC

Clone NameMSMg01-190K21
Chromosome1 (Build37)
Map Location 111,269,802 - 111,270,118
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190K21.T7 (MSMg01no190_k21.b1)MSMg01-190K21.TJ (MSMg01no190_k21.g1)
ACCAG380942AG380943
length759705
length of high quality
(start - end)
321 (55 - 375)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no190_k21.b1 PHD_FILE: MSMg01no190_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:01 2005CHROMAT_FILE: MSMg01no190_k21.g1 PHD_FILE: MSMg01no190_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATTTCTGACTTATTTTGGTAATGAACAGCAATTTG
GAAATGTAAGTTGAATAAACCCTTTCCTTCTCAACTTGCTTCCTGGTCAT
GATGTTTGCAGGAATAGAAACCCTGACTAAAAACAATTTGTTTTAGTCAG
GGTTTGTATTCTTTCACAGTGGTGCTGTGTACAACTCCATTCACTATATG
CCTCATTAGCAACTCAAATCTCCATCCAGGGATATTTGTTTTAGTATTAT
AGTCAGTAATAGGTTATTTCAGGACACTCTAGTGCCTTCAAGTTTCATCC
AGTATCCTGTCTTCAGAGGCTGTTATATTTACCTCCCCACCCTTACTTTC
TACCAACTCAATTTCCAATGCTAGACGGTTAGGCTTTATCAAGTCCCTTC
TGATTGTCACTCTGCACTTTCTCCTACCTTATTGGAATCATTGATTTGTT
TTTTTCTTATGATTCGTCATAGAAGTTTACATAATTGAGAGTGTAATCTT
TCAAAGAGTGAATACTGAAATGAAAGAAACTGAAGAAAATAAACATTTAA
GAAATAAAATTGAGTCTTCAACATACAGAACAAATGAAAATTTTCTTTTC
TTGTAAATAAAACAATTAAGAAAAGGAATACTCCAGAAGAGTATGAATAA
AATAGATTCAAGAAATTAGGTGTGTCAGAAATAAGTGTCAATATTAATAA
ACAATGAAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAAAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTTCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAGAATTGGACATAGTACTACCGGAGGATCCA
GCAATACTTCNCCTGGTCCATATCAAGACCATGCCCNAATAGGTAAGAAG
GACACATGCTCCACTATCTTCATAAAAAAATTATTTATAATAGCCGGAAG
CTGGAAAGAACCCAGATGCCCCTCAACATAGGAATGGATACAGAAAATGT
AGTACATCTACACAATGGAGTACTACTGAGATATTAAAAAAAAAGAATTA
TGAAATTCCTAGCCAAATGGATGGACCTGGGGGGCATCATCCTAAGTGAG
GTAACACATTCACAACGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCGAAAACCTAGGATACCCAAGATATAAGATACAAATTCCTAA
ACGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_k21.b1 MSMg01no190_k21.b1 CHROMAT_FILE:
MSMg01no190_k21.b1 PHD_FILE: MSMg01no190_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:01 2005
         (321 letters)



>mm_chr1_111269474_111270194
          Length = 721

 Score =  547 bits (283), Expect = e-160
 Identities = 308/317 (97%), Gaps = 2/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatttctgacttattttggtaatgaacagcaatttggaaatgtaagttgaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gaattccatttctgacttattttggtaatgaacagcaatttggaaatgtaagttgaataa 586

                                                                       
Query: 65  accctttccttctcaacttgcttcctggtcatgatgtt--tgcaggaatagaaaccctga 122
           |||||||| ||| ||| ||| |||||||||||||||||  ||||||||||||||||||||
Sbjct: 585 accctttctttcacaatttgattcctggtcatgatgtttgtgcaggaatagaaaccctga 526

                                                                       
Query: 123 ctaaaaacaatttgttttagtcagggtttgtattctttcacagtggtgctgtgtacaact 182
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 525 ctaaaaacaatttgttttaggcagggtttgtattctttcacagtgttgctgtgtacaact 466

                                                                       
Query: 183 ccattcactatatgcctcattagcaactcaaatctccatccagggatatttgttttagta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ccattcactatatgcctcattagcaactcaaatctccatccagggatatttgttttagta 406

                                                                       
Query: 243 ttatagtcagtaataggttatttcaggacactctagtgccttcaagtttcatccagtatc 302
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 405 ttatagtcagtaataggttatttcagaacactctagtgccttcaagtttcatccagtatc 346

                            
Query: 303 ctgtcttcagaggctgt 319
           |||||||||||||||||
Sbjct: 345 ctgtcttcagaggctgt 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)