BAC Information

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BAC

Clone NameMSMg01-190L05
Chromosome1 (Build37)
Map Location 126,231,205 - 126,231,522
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp10
Downstream geneLOC666998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190L05.T7 (MSMg01no190_l05.b1)MSMg01-190L05.TJ (MSMg01no190_l05.g1)
ACCAG380952AG380953
length676773
length of high quality
(start - end)
324 (5 - 328)289 (57 - 345)
definitionCHROMAT_FILE: MSMg01no190_l05.b1 PHD_FILE: MSMg01no190_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:03 2005CHROMAT_FILE: MSMg01no190_l05.g1 PHD_FILE: MSMg01no190_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGATCCGCGGAATTCTAGCTTCTAGGGTAACTGTGAGCAAGAAGCAAA
ACAGTATTTATAGGATGCTTTAAAGATCACTAACTATAGTAAATACTGTA
GACAGATGGTTACACATACAAGCCCATACACAACATACACGGGCAGAAGC
AAAAAGAAAAATGTACATAAATACAAATATATACAAAGGCACAAATATAC
ACACACACATGTAAATACACATACACACATATAGGACATGATATAAAACA
CAGCATGAGAAGACAATTATGCAAATCAAATAAAGTATAATTGTGAATTT
CCATTCAAGCTATACATTAATTTTAAATATGTGACCCACCCATGCAATCT
ATCTAAGATAACTTCCTAGAAACAAAAAAGAACATATTCTGTATGGTACT
GTAAGTGGGGTAGGGTTGATATCAGCAAGAAGATGTTAGAAGTCCTTTCT
GCCTGTTATTTATATTTCAAAAGTACAATAATCTCCCATAAAAACCACTG
ACTTGCCTGCCACTAAATGTGGTTCAAGCAGAAACTGTAAGATAGATTAT
TTTGGGGGCTATAATAAAGAGAATTTCTGCAGTGGATATGACTTTGGAAA
AATGAACTCTACAATGCTGCTCAAGTCTAGAGTGATGAATCTGGTGTGAT
ATAGAACTGAGTACCTTGGAAAATAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTGTTCAGTTCTGAGCTCCATTTTTTAATGGGGTTATTTGATT
TTCTGAACCCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCGCTGTCTCTTGTCAGAGT
ATGCCTGGGCCTAGCAAACATAGAAGTGGATGCTCACCGTCGGCTATTGG
ATGGATCACATGGCCCCCTATGAAGGAGCTAGAGAACGCACCAAAGAAGC
TAAAGGGATCTGTAACCCTATAGGTGGAACAACATTATGAACTAACCATT
ATCTTTTGACCCCCCCCCCCCAGNTGAATATGCATCAAAAGATGGCCTAG
TCGGCCCTCACTGAAAAGAGAGAGCCATTGGACACGCGGACTTTATATGT
CCCAGTACAGGGGAACGCCAGGGTCATAAAAGGGTAGTGGCTGGTTCTCG
TTTTCCCTCTTCTTCTTTTTTTTCAGCCCCGGTTTTTTCCTTATTATTAT
TCACCTCCCCGCATTTTTTCCGTAGTAGTGTGTTGTCGCCTCCAGCATCA
CGCGGGTGTGTTTTTTTTTTTAGCTCTTCTAAGGTCCATGGAATGCTATT
CTGCGCGTGTTTCTACATACTTCACCACTAGTCCCGTCCTCCCCACCGCC
CCACCTACAAATACCCCCCTTTTCTCCTTCGTCCTAACCGTACTATATCC
CCGCCCATTATCTATCCGCGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_l05.b1 MSMg01no190_l05.b1 CHROMAT_FILE:
MSMg01no190_l05.b1 PHD_FILE: MSMg01no190_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:03 2005
         (324 letters)



>mm_chr1_126230999_126231722
          Length = 724

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattctagcttctagggtaactgtgagcaagaagcaaaacagtatttataggatgctt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctagcttctagggtaactgtgagcaagaagcaaaacagtatttataggatgctt 266

                                                                       
Query: 67  taaagatcactaactatagtaaatactgtagacagatggttacacatacaagcccataca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taaagatcactaactatagtaaatactgtagacagatggttacacatacaagcccataca 326

                                                                       
Query: 127 caacatacacgggcagaagcaaaaagaaaaatgtacataaatacaaatatatacaaaggc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caacatacacgggcagaagcaaaaagaaaaatgtacataaatacaaatatatacaaaggc 386

                                                                       
Query: 187 acaaatatacacacacacatgtaaatacacatacacacatataggacatgatataaaaca 246
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acaaatacacacacacacatgtaaatacacatacacacatataggacatgatataaaaca 446

                                                                       
Query: 247 cagcatgagaagacaattatgcaaatcaaataaagtataattgtgaatttccattcaagc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagcatgagaagacaattatgcaaatcaaataaagtataattgtgaatttccattcaagc 506

                             
Query: 307 tatacattaattttaaat 324
           ||||||||||||||||||
Sbjct: 507 tatacattaattttaaat 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)