BAC Information

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BAC

Clone NameMSMg01-190N14
Chromosome1 (Build37)
Map Location 125,183,329 - 125,313,852
singlet/doubletdoublet
Overlap geneDpp10
Upstream geneLOC666983
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190N14.T7 (MSMg01no190_n14.b1)MSMg01-190N14.TJ (MSMg01no190_n14.g1)
ACCAG381055AG381056
length730729
length of high quality
(start - end)
316 (46 - 361)290 (58 - 347)
definitionCHROMAT_FILE: MSMg01no190_n14.b1 PHD_FILE: MSMg01no190_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:15 2005CHROMAT_FILE: MSMg01no190_n14.g1 PHD_FILE: MSMg01no190_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,313,644 - 125,313,852)(125,183,329 - 125,183,615)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGGTGCTCTGGAATATAATGACTTGTATAGTTGCATAGACATG
TTTGGAAAACACATTGATGACACAGTCAATAACAACAAAGGTGTGTGTGA
GGTCTAGGGAGGTGGTTCAAACAAGACAGTGGTGATAGTGCAACAAGAAG
GTCCTGAGTTTAGTCCTCAGGAGATTATATGTATATAACCATTAAGGTTA
TATATATAATCTTAGCACTAGAAAGGCAGAAATAGGCAAATATGCAGATC
CCAGGTGCTTGTTGGATAGTCTCATTGAGTTGGTGAGCCACTAGGGTACT
TAGATACTGTGGTTTTATTTTCCCCCCCCCCCCCCAGCGATGAGAGAGTT
AAAGAGTGACTACACATACTCACACATCTTCAAAGAGAAACAAAGGAAGG
GAGGAAGGAAAGCAGGCAGAAAGACTGCTAACAAAGGTCTGATTCCAGCA
CACCCATATTGAAGTGATTCTGAGAGTCCATTACACATGCTTTGGACACT
TGAATCTTCTGAGAAACAACAGAAAGTCTCTGAAGGCTAGCGTATTGTCC
CTTTAAACAGTTTGTTTCTGCCTCTACGCCTCAGTCTTTGTTTATGAGCT
AACAGTATGTGTGCTAGGAATTAAATGAAGATGTGCATCAGGGTATCTTG
GTGTACAGAAAGTGTAGAAAAAAGCGAGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTAATTAAAAGATGAACAAAATTAAAAAGGAAGCAGGGGAGA
AGGAGAGTTGCTTCACTCACTTTTTAGGTAGAACAAGCTAATAAAATATA
AGCAGGGTTTTGTGCAAGACAATAGAATAAATACTTATTAGTCTATGCTT
GGATAAACAACTGAACAGAGAGACTTAGATAAATGGATACTTAGCAGATA
AATAGACCAATGATAAACATTGCTTGTGCCAGAAATTTAAAACATTTCAG
GTAGATAAATTGTTGTTAAGGGCCTTAAATCCATTACTTTTTGTTTCTTG
TTTCCCCCCCCCCCCCCCACATAGCTCAAAGGAGGAGAGATTTGTTCTGC
ACTTAAATAAAAAAAACCTGTGTTCCTTGGTGGAGGAAAGGCATGCTGGT
TGTTTGGGCCTATAGAAATGAAAGCCTGTGTGTTGGGACCTGTAATTGAA
TGCCGGAAAGACCTGGTTAGAGGGGGAGATAGCCTATCTCATTCTCACGG
TAAACTCTCTAGTTCCCTACACTTACCCTACTTATACTTATATTTTTTCT
TTCTACCCCATATATATACCTTTTTTAGCTTATCTTTTCACATTCTTTTC
TTAATATGTGGACCCGCCTATTGTGTGGATTCTTTTTTTTCACATTATTA
TTGTTTCGCACACGCCCCTCTCCCCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_n14.b1 MSMg01no190_n14.b1 CHROMAT_FILE:
MSMg01no190_n14.b1 PHD_FILE: MSMg01no190_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:15 2005
         (316 letters)



>mm_chr1_125313548_125314263
          Length = 716

 Score =  358 bits (185), Expect = e-103
 Identities = 203/209 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgggtgctctggaatataatgacttgtatagttgcatagacatgtttggaaaa 64
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct: 305 gaattcctgggtgctctggaatagaatgacttgtatagttgtatagacatgtttgaaaaa 246

                                                                       
Query: 65  cacattgatgacacagtcaataacaacaaaggtgtgtgtgaggtctagggaggtggttca 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cacattgatgatacagtcaataacaacaaaggtgtgtgtgaggtctagggaggtggttca 186

                                                                       
Query: 125 aacaagacagtggtgatagtgcaacaagaaggtcctgagtttagtcctcaggagattata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aacaagacagtggtgatagtgcaacaagaaggtcctgagtttagtcctcaggagattata 126

                                        
Query: 185 tgtatataaccattaaggttatatatata 213
           ||||||||||||||||| || ||||||||
Sbjct: 125 tgtatataaccattaagattttatatata 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no190_n14.g1 MSMg01no190_n14.g1 CHROMAT_FILE:
MSMg01no190_n14.g1 PHD_FILE: MSMg01no190_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:15 2005
         (290 letters)



>mm_chr1_125183129_125183818
          Length = 690

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaattaaaagatgaacaaaattaaaaaggaagcaggggagaaggagagttgcttcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaattaaaagatgaacaaaattaaaaaggaagcaggggagaaggagagttgcttcact 260

                                                                       
Query: 61  cactttttaggtagaacaagctaataaaatataagcagggttttgtgcaagacaatagaa 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 cactttttaggtagaacaagctaataaaatataagcagtgttttgtgcaagacaatagaa 320

                                                                       
Query: 121 taaatacttattagtctatgcttggataaacaactgaacagagagacttagataaatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatacttattagtctatgcttggataaacaactgaacagagagacttagataaatgga 380

                                                                       
Query: 181 tacttagcagataaatagaccaatgataaacattgcttgtgccagaaatttaaaacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttagcagataaatagaccaatgataaacattgcttgtgccagaaatttaaaacattt 440

                                                          
Query: 241 caggtagataaattgttgttaagggccttaaatccattactttttgt 287
           |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 caggtagataaattgttgttaagggccttagatccattactttttgt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)